Journal of Chemical Information & Computer Sciences
Term identification in the biomedical literature
Journal of Biomedical Informatics - Special issue: Named entity recognition in biomedicine
Comparative and Functional Genomics
High-Throughput identification of chemistry in life science texts
CompLife'06 Proceedings of the Second international conference on Computational Life Sciences
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Mapping and classification of chemical compound names are important aspects of the tasks of BioNLP. This paper introduces the architecture of a system for the syntactic and semantic analysis of such names. Our system aims at yielding both the denoted chemical structure and a classification of a given name. We employ a novel approach to the task which promises an elegant and efficient way of solving the problem. The proposed system differs significantly from existing systems, in that it is also able to deal with underspecifying names and class names.