Conditional Random Fields: Probabilistic Models for Segmenting and Labeling Sequence Data
ICML '01 Proceedings of the Eighteenth International Conference on Machine Learning
Extracting the names of genes and gene products with a hidden Markov model
COLING '00 Proceedings of the 18th conference on Computational linguistics - Volume 1
Ranking algorithms for named-entity extraction: boosting and the voted perceptron
ACL '02 Proceedings of the 40th Annual Meeting on Association for Computational Linguistics
Shallow parsing with conditional random fields
NAACL '03 Proceedings of the 2003 Conference of the North American Chapter of the Association for Computational Linguistics on Human Language Technology - Volume 1
CONLL '03 Proceedings of the seventh conference on Natural language learning at HLT-NAACL 2003 - Volume 4
An application of text categorization methods to gene ontology annotation
Proceedings of the 28th annual international ACM SIGIR conference on Research and development in information retrieval
ME-based biomedical named entity recognition using lexical knowledge
ACM Transactions on Asian Language Information Processing (TALIP)
Boosting performance of bio-entity recognition by combining results from multiple systems
Proceedings of the 5th international workshop on Bioinformatics
Accelerated training of conditional random fields with stochastic gradient methods
ICML '06 Proceedings of the 23rd international conference on Machine learning
Improving the scalability of semi-Markov conditional random fields for named entity recognition
ACL-44 Proceedings of the 21st International Conference on Computational Linguistics and the 44th annual meeting of the Association for Computational Linguistics
Information extraction from calls for papers with conditional random fields and layout features
Artificial Intelligence Review
Feature forest models for probabilistic hpsg parsing
Computational Linguistics
Exploiting the contextual cues for bio-entity name recognition in biomedical literature
Journal of Biomedical Informatics
Gene ontology annotation as text categorization: An empirical study
Information Processing and Management: an International Journal
BioPPIExtractor: A protein-protein interaction extraction system for biomedical literature
Expert Systems with Applications: An International Journal
Experimental Study on a Two Phase Method for Biomedical Named Entity Recognition
IEICE - Transactions on Information and Systems
An Efficient Method for Generating, Storing and Matching Features for Text Mining
PAKDD '09 Proceedings of the 13th Pacific-Asia Conference on Advances in Knowledge Discovery and Data Mining
Data Mining and Knowledge Discovery
Introduction to the bio-entity recognition task at JNLPBA
JNLPBA '04 Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications
Recognizing nested named entities in GENIA corpus
BioNLP '06 Proceedings of the Workshop on Linking Natural Language Processing and Biology: Towards Deeper Biological Literature Analysis
Accelerating the annotation of sparse named entities by dynamic sentence selection
BioNLP '08 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing
How to make the most of NE dictionaries in statistical NER
BioNLP '08 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing
An unsupervised method for extracting domain-specific affixes in biological literature
BioNLP '07 Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing
BioNoculars: extracting protein-protein interactions from biomedical text
BioNLP '07 Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing
Evaluating and combining biomedical named entity recognition systems
BioNLP '07 Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing
A supervised learning approach to biological question answering
Integrated Computer-Aided Engineering - Selected papers from the IEEE Conference on Information Reuse and Integration (IRI), July 13-15, 2008
Brief Communication: Two-phase biomedical named entity recognition using CRFs
Computational Biology and Chemistry
Semantic Annotation of City Transportation Information Dialogues Using CRF Method
TSD '09 Proceedings of the 12th International Conference on Text, Speech and Dialogue
Feature selection techniques for maximum entropy based biomedical named entity recognition
Journal of Biomedical Informatics
Assigning roles to protein mentions: The case of transcription factors
Journal of Biomedical Informatics
Efficient annotation with the Jena ANnotation Environment (JANE)
LAW '07 Proceedings of the Linguistic Annotation Workshop
Recognizing nested named entities in GENIA corpus
LNLBioNLP '06 Proceedings of the HLT-NAACL BioNLP Workshop on Linking Natural Language and Biology
Latent variable perceptron algorithm for structured classification
IJCAI'09 Proceedings of the 21st international jont conference on Artifical intelligence
Using conditional random fields for result identification in biomedical abstracts
Integrated Computer-Aided Engineering
Selecting features of linear-chain conditional random fields via greedy stage-wise algorithms
Pattern Recognition Letters
Classifier subset selection for biomedical named entity recognition
Applied Intelligence
Geographic signatures for semantic retrieval
Proceedings of the 6th Workshop on Geographic Information Retrieval
CRF-based active learning for Chinese named entity recognition
SMC'09 Proceedings of the 2009 IEEE international conference on Systems, Man and Cybernetics
Ontology-based MEDLINE document classification
BIRD'07 Proceedings of the 1st international conference on Bioinformatics research and development
PAKDD'07 Proceedings of the 2007 international conference on Emerging technologies in knowledge discovery and data mining
Domain adaptation for conditional random fields
AIRS'08 Proceedings of the 4th Asia information retrieval conference on Information retrieval technology
Recognizing biomedical named entities in Chinese research abstracts
Canadian AI'08 Proceedings of the Canadian Society for computational studies of intelligence, 21st conference on Advances in artificial intelligence
DAS '10 Proceedings of the 9th IAPR International Workshop on Document Analysis Systems
A composite kernel for named entity recognition
Pattern Recognition Letters
Cascading classifiers for named entity recognition in clinical notes
WBIE '09 Proceedings of the Workshop on Biomedical Information Extraction
Annotating large email datasets for named entity recognition with Mechanical Turk
CSLDAMT '10 Proceedings of the NAACL HLT 2010 Workshop on Creating Speech and Language Data with Amazon's Mechanical Turk
A proposal for a configurable silver standard
LAW IV '10 Proceedings of the Fourth Linguistic Annotation Workshop
Disease mention recognition with specific features
BioNLP '10 Proceedings of the 2010 Workshop on Biomedical Natural Language Processing
SMUC '10 Proceedings of the 2nd international workshop on Search and mining user-generated contents
Automatically extracting information needs from complex clinical questions
Journal of Biomedical Informatics
SEISA: set expansion by iterative similarity aggregation
Proceedings of the 20th international conference on World wide web
Labelwise margin maximization for sequence labeling
CICLing'11 Proceedings of the 12th international conference on Computational linguistics and intelligent text processing - Volume Part I
Parsing citations in biomedical articles using conditional random fields
Computers in Biology and Medicine
Ontology learning from biomedical natural language documents using UMLS
Expert Systems with Applications: An International Journal
A metadata geoparsing system for place name recognition and resolution in metadata records
Proceedings of the 11th annual international ACM/IEEE joint conference on Digital libraries
Automatic acquisition of huge training data for bio-medical named entity recognition
BioNLP '11 Proceedings of BioNLP 2011 Workshop
A language independent approach for named entity recognition in subject headings
TPDL'11 Proceedings of the 15th international conference on Theory and practice of digital libraries: research and advanced technology for digital libraries
A bootstrapping approach for training a NER with conditional random fields
EPIA'11 Proceedings of the 15th Portugese conference on Progress in artificial intelligence
Mining methodologies from NLP publications: A case study in automatic terminology recognition
Computer Speech and Language
Generating links to background knowledge: a case study using narrative radiology reports
Proceedings of the 20th ACM international conference on Information and knowledge management
Biomedical named entities recognition using conditional random fields model
FSKD'06 Proceedings of the Third international conference on Fuzzy Systems and Knowledge Discovery
Enhancing phylogeography by improving geographical information from GenBank
Journal of Biomedical Informatics
Empirical textual mining to protein entities recognition from pubmed corpus
NLDB'05 Proceedings of the 10th international conference on Natural Language Processing and Information Systems
Bootstrapped named entity recognition for product attribute extraction
EMNLP '11 Proceedings of the Conference on Empirical Methods in Natural Language Processing
Two-phase biomedical named entity recognition using a hybrid method
IJCNLP'05 Proceedings of the Second international joint conference on Natural Language Processing
Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine
BioLog: a browser based collaboration and resource navigation assistant for biomedical researchers
DILS'05 Proceedings of the Second international conference on Data Integration in the Life Sciences
Stochastic web-based natural language dialog planning for web information filtering
Expert Systems with Applications: An International Journal
Proceedings of the 12th ACM/IEEE-CS joint conference on Digital Libraries
A generic classifier-ensemble approach for biomedical named entity recognition
PAKDD'12 Proceedings of the 16th Pacific-Asia conference on Advances in Knowledge Discovery and Data Mining - Volume Part I
Active learning technique for biomedical named entity extraction
Proceedings of the International Conference on Advances in Computing, Communications and Informatics
Recall-oriented learning of named entities in Arabic Wikipedia
EACL '12 Proceedings of the 13th Conference of the European Chapter of the Association for Computational Linguistics
More for your money: exploiting performance heterogeneity in public clouds
Proceedings of the Third ACM Symposium on Cloud Computing
Biomedical named entity recognition: a poor knowledge HMM-based approach
NLDB'07 Proceedings of the 12th international conference on Applications of Natural Language to Information Systems
BioOntoVerb: A top level ontology based framework to populate biomedical ontologies from texts
Knowledge-Based Systems
CICLing'13 Proceedings of the 14th international conference on Computational Linguistics and Intelligent Text Processing - Volume Part I
Facilitating the analysis of discourse phenomena in an interoperable NLP platform
CICLing'13 Proceedings of the 14th international conference on Computational Linguistics and Intelligent Text Processing - Volume Part I
Stacked ensemble coupled with feature selection for biomedical entity extraction
Knowledge-Based Systems
Unsupervised biomedical named entity recognition: Experiments with clinical and biological texts
Journal of Biomedical Informatics
Towards a Protein-Protein Interaction information extraction system: Recognizing named entities
Knowledge-Based Systems
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As the wealth of biomedical knowledge in the form of literature increases, there is a rising need for effective natural language processing tools to assist in organizing, curating, and retrieving this information. To that end, named entity recognition (the task of identifying words and phrases in free text that belong to certain classes of interest) is an important first step for many of these larger information management goals.