AI Magazine
Enabling agents to work together
Communications of the ACM
Towards a standard upper ontology
Proceedings of the international conference on Formal Ontology in Information Systems - Volume 2001
Extracting Biochemical Interactions from MEDLINE Using a Link Grammar Parser
ICTAI '03 Proceedings of the 15th IEEE International Conference on Tools with Artificial Intelligence
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data
Journal of Biomedical Informatics
Design and implementation of the UIMA common analysis system
IBM Systems Journal
Artificial General Intelligence (Cognitive Technologies)
Artificial General Intelligence (Cognitive Technologies)
Simple algorithms for complex relation extraction with applications to biomedical IE
ACL '05 Proceedings of the 43rd Annual Meeting on Association for Computational Linguistics
Analysis of link grammar on biomedical dependency corpus targeted at protein-protein interactions
JNLPBA '04 Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications
Introduction to the bio-entity recognition task at JNLPBA
JNLPBA '04 Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications
Proceedings of the 2008 conference on Artificial General Intelligence 2008: Proceedings of the First AGI Conference
Nonlinear-dynamical attention allocation via information geometry
AGI'11 Proceedings of the 4th international conference on Artificial general intelligence
Probabilistic logic networks in a nutshell
SUM'11 Proceedings of the 5th international conference on Scalable uncertainty management
Perception processing for general intelligence: bridging the symbolic/subsymbolic gap
AGI'12 Proceedings of the 5th international conference on Artificial General Intelligence
AGI'12 Proceedings of the 5th international conference on Artificial General Intelligence
AGI'12 Proceedings of the 5th international conference on Artificial General Intelligence
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We describe BioLiterate, a prototype software system which infers relationships involving relationships between genes, proteins and malignancies from research abstracts, and has initially been tested in the domain of the molecular genetics of oncology. The architecture uses a natural language processing module to extract entities, dependencies and simple semantic relationships from texts, and then feeds these features into a probabilistic reasoning module which combines the semantic relationships extracted by the NLP module to form new semantic relationships. One application of this system is the discovery of relationships that are not contained in any individual abstract but are implicit in the combined knowledge contained in two or more abstracts.