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SETQA-NLP '09 Proceedings of the Workshop on Software Engineering, Testing, and Quality Assurance for Natural Language Processing
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IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
The CoNLL-2010 shared task: learning to detect hedges and their scope in natural language text
CoNLL '10: Shared Task Proceedings of the Fourteenth Conference on Computational Natural Language Learning --- Shared Task
Generality and reuse in a common type system for clinical natural language processing
Proceedings of the first international workshop on Managing interoperability and complexity in health systems
BioNLP Shared Task 2011: supporting resources
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Extracting and normalizing gene/protein mentions with the flexible and trainable moara java library
ISMB/ECCB'09 Proceedings of the 2009 workshop of the BioLink Special Interest Group, international conference on Linking Literature, Information, and Knowledge for Biology
Proceedings of the 2nd international workshop on Managing interoperability and compleXity in health systems
Facilitating the analysis of discourse phenomena in an interoperable NLP platform
CICLing'13 Proceedings of the 14th international conference on Computational Linguistics and Intelligent Text Processing - Volume Part I
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Summary: Due to the increasing number of text mining resources (tools and corpora) available to biologists, interoperability issues between these resources are becoming significant obstacles to using them effectively. UIMA, the Unstructured Information Management Architecture, is an open framework designed to aid in the construction of more interoperable tools. U-Compare is built on top of the UIMA framework, and provides both a concrete framework for out-of-the-box text mining and a sophisticated evaluation platform allowing users to run specific tools on any target text, generating both detailed statistics and instance-based visualizations of outputs. U-Compare is a joint project, providing the world's largest, and still growing, collection of UIMA-compatible resources. These resources, originally developed by different groups for a variety of domains, include many famous tools and corpora. U-Compare can be launched straight from the web, without needing to be manually installed. All U-Compare components are provided ready-to-use and can be combined easily via a drag-and-drop interface without any programming. External UIMA components can also simply be mixed with U-Compare components, without distinguishing between locally and remotely deployed resources. Availability: http://u-compare.org/ Contact: kano@is.s.u-tokyo.ac.jp