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Coarse-to-fine n-best parsing and MaxEnt discriminative reranking
ACL '05 Proceedings of the 43rd Annual Meeting on Association for Computational Linguistics
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Feature forest models for probabilistic hpsg parsing
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The BioScope corpus: annotation for negation, uncertainty and their scope in biomedical texts
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Overview of BioNLP'09 shared task on event extraction
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
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CoNLL-X shared task on multilingual dependency parsing
CoNLL-X '06 Proceedings of the Tenth Conference on Computational Natural Language Learning
Porting a lexicalized-grammar parser to the biomedical domain
Journal of Biomedical Informatics
Complex event extraction at PubMed scale
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Joint inference for knowledge extraction from biomedical literature
HLT '10 Human Language Technologies: The 2010 Annual Conference of the North American Chapter of the Association for Computational Linguistics
Memory-based resolution of in-sentence scopes of hedge cues
CoNLL '10: Shared Task Proceedings of the Fourteenth Conference on Computational Natural Language Learning --- Shared Task
Evaluating the impact of alternative dependency graph encodings on solving event extraction tasks
EMNLP '10 Proceedings of the 2010 Conference on Empirical Methods in Natural Language Processing
Evaluating dependency representation for event extraction
COLING '10 Proceedings of the 23rd International Conference on Computational Linguistics
Any domain parsing: automatic domain adaptation for natural language parsing
Any domain parsing: automatic domain adaptation for natural language parsing
Overview of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Overview of Genia event task in BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Overview of the infectious diseases (ID) task of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
BioNLP Shared Task 2011: bacteria biotope
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
BioNLP Shared Task 2011: bacteria gene interactions and renaming
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Overview of the protein coreference task in BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Overview of the entity relations (REL) supporting task of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Double layered learning for biological event extraction from text
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
MSR-NLP entry in BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Overview of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Overview of the infectious diseases (ID) task of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Biomedical event extraction from abstracts and full papers using search-based structured prediction
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Event extraction as dependency parsing for BioNLP 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Overview of the entity relations (REL) supporting task of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Double layered learning for biological event extraction from text
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
BRAT: a web-based tool for NLP-assisted text annotation
EACL '12 Proceedings of the Demonstrations at the 13th Conference of the European Chapter of the Association for Computational Linguistics
BioNLP '12 Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
New resources and perspectives for biomedical event extraction
BioNLP '12 Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
ExProM '12 Proceedings of the Workshop on Extra-Propositional Aspects of Meaning in Computational Linguistics
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CICLing'13 Proceedings of the 14th international conference on Computational Linguistics and Intelligent Text Processing - Volume Part I
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This paper describes the supporting resources provided for the BioNLP Shared Task 2011. These resources were constructed with the goal to alleviate some of the burden of system development from the participants and allow them to focus on the novel aspects of constructing their event extraction systems. With the availability of these resources we also seek to enable the evaluation of the applicability of specific tools and representations towards improving the performance of event extraction systems. Additionally we supplied evaluation software and services and constructed a visualisation tool, stav, which visualises event extraction results and annotations. These resources helped the participants make sure that their final submissions and research efforts were on track during the development stages and evaluate their progress throughout the duration of the shared task. The visualisation software was also employed to show the differences between the gold annotations and those of the submitted results, allowing the participants to better understand the performance of their system. The resources, evaluation tools and visualisation tool are provided freely for research purposes and can be found at http://sites.google.com/site/bionlpst/