Coarse-to-fine n-best parsing and MaxEnt discriminative reranking
ACL '05 Proceedings of the 43rd Annual Meeting on Association for Computational Linguistics
Overview of BioNLP'09 shared task on event extraction
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
Event extraction from trimmed dependency graphs
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
Incorporating GENETAG-style annotation to GENIA corpus
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing
Event extraction for post-translational modifications
BioNLP '10 Proceedings of the 2010 Workshop on Biomedical Natural Language Processing
Towards exhaustive protein modification event extraction
BioNLP '11 Proceedings of BioNLP 2011 Workshop
Any domain parsing: automatic domain adaptation for natural language parsing
Any domain parsing: automatic domain adaptation for natural language parsing
Overview of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Overview of Genia event task in BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Overview of the infectious diseases (ID) task of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Event extraction as dependency parsing for BioNLP 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Robust biomedical event extraction with dual decomposition and minimal domain adaptation
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Model combination for event extraction in BioNLP 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
BioNLP Shared Task 2011: supporting resources
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
MSR-NLP entry in BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
From graphs to events: a subgraph matching approach for information extraction from biomedical text
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Adapting a general semantic interpretation approach to biological event extraction
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Generalizing biomedical event extraction
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
From pathways to biomolecular events: opportunities and challenges
BioNLP '11 Proceedings of BioNLP 2011 Workshop
Towards exhaustive protein modification event extraction
BioNLP '11 Proceedings of BioNLP 2011 Workshop
SimSem: fast approximate string matching in relation to semantic category disambiguation
BioNLP '11 Proceedings of BioNLP 2011 Workshop
Overview of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Overview of the infectious diseases (ID) task of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Event extraction as dependency parsing for BioNLP 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Robust biomedical event extraction with dual decomposition and minimal domain adaptation
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Model combination for event extraction in BioNLP 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Overview of the entity relations (REL) supporting task of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
BioNLP Shared Task 2011: supporting resources
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
From graphs to events: a subgraph matching approach for information extraction from biomedical text
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Adapting a general semantic interpretation approach to biological event extraction
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
BioNLP '12 Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
New resources and perspectives for biomedical event extraction
BioNLP '12 Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
ExProM '12 Proceedings of the Workshop on Extra-Propositional Aspects of Meaning in Computational Linguistics
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This paper presents the preparation, resources, results and analysis of the Epigenetics and Post-translational Modifications (EPI) task, a main task of the BioNLP Shared Task 2011. The task concerns the extraction of detailed representations of 14 protein and DNA modification events, the catalysis of these reactions, and the identification of instances of negated or speculatively stated event instances. Seven teams submitted final results to the EPI task in the shared task, with the highest-performing system achieving 53% F-score in the full task and 69% F-score in the extraction of a simplified set of core event arguments.