Coarse-to-fine n-best parsing and MaxEnt discriminative reranking
ACL '05 Proceedings of the 43rd Annual Meeting on Association for Computational Linguistics
Self-training for biomedical parsing
HLT-Short '08 Proceedings of the 46th Annual Meeting of the Association for Computational Linguistics on Human Language Technologies: Short Papers
Overview of BioNLP'09 shared task on event extraction
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
Extracting complex biological events with rich graph-based feature sets
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
A Markov logic approach to bio-molecular event extraction
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
Syntactic dependency based heuristics for biological event extraction
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
Complex event extraction at PubMed scale
Bioinformatics
Joint inference for knowledge extraction from biomedical literature
HLT '10 Human Language Technologies: The 2010 Annual Conference of the North American Chapter of the Association for Computational Linguistics
Two strong baselines for the BioNLP 2009 event extraction task
BioNLP '10 Proceedings of the 2010 Workshop on Biomedical Natural Language Processing
A comparative study of syntactic parsers for event extraction
BioNLP '10 Proceedings of the 2010 Workshop on Biomedical Natural Language Processing
Overview of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Biomedical event extraction from abstracts and full papers using search-based structured prediction
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Event extraction as dependency parsing for BioNLP 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Robust biomedical event extraction with dual decomposition and minimal domain adaptation
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Model combination for event extraction in BioNLP 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Using Kybots for extracting events in biomedical texts
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Extracting biological events from text using simple syntactic patterns
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
A pattern approach for biomedical event annotation
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Double layered learning for biological event extraction from text
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
MSR-NLP entry in BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
From graphs to events: a subgraph matching approach for information extraction from biomedical text
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Adapting a general semantic interpretation approach to biological event extraction
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Generalizing biomedical event extraction
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
SimSem: fast approximate string matching in relation to semantic category disambiguation
BioNLP '11 Proceedings of BioNLP 2011 Workshop
Overview of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Overview of the infectious diseases (ID) task of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Biomedical event extraction from abstracts and full papers using search-based structured prediction
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Event extraction as dependency parsing for BioNLP 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Robust biomedical event extraction with dual decomposition and minimal domain adaptation
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Model combination for event extraction in BioNLP 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Overview of the entity relations (REL) supporting task of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
BioNLP Shared Task 2011: supporting resources
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Using Kybots for extracting events in biomedical texts
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Double layered learning for biological event extraction from text
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
From graphs to events: a subgraph matching approach for information extraction from biomedical text
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Adapting a general semantic interpretation approach to biological event extraction
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
What's in a name?: entity type variation across two biomedical subdomains
EACL '12 Proceedings of the Student Research Workshop at the 13th Conference of the European Chapter of the Association for Computational Linguistics
UConcordia: CLaC negation focus detection at *Sem 2012
SemEval '12 Proceedings of the First Joint Conference on Lexical and Computational Semantics - Volume 1: Proceedings of the main conference and the shared task, and Volume 2: Proceedings of the Sixth International Workshop on Semantic Evaluation
New resources and perspectives for biomedical event extraction
BioNLP '12 Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
ExProM '12 Proceedings of the Workshop on Extra-Propositional Aspects of Meaning in Computational Linguistics
Automatic pipeline construction for real-time annotation
CICLing'13 Proceedings of the 14th international conference on Computational Linguistics and Intelligent Text Processing - Volume Part I
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The Genia event task, a bio-molecular event extraction task, is arranged as one of the main tasks of BioNLP Shared Task 2011. As its second time to be arranged for community-wide focused efforts, it aimed to measure the advance of the community since 2009, and to evaluate generalization of the technology to full text papers. After a 3-month system development period, 15 teams submitted their performance results on test cases. The results show the community has made a significant advancement in terms of both performance improvement and generalization.