Applied morphological processing of English
Natural Language Engineering
Intricacies of Collins' Parsing Model
Computational Linguistics
The second release of the RASP system
COLING-ACL '06 Proceedings of the COLING/ACL on Interactive presentation sessions
Self-training for biomedical parsing
HLT-Short '08 Proceedings of the 46th Annual Meeting of the Association for Computational Linguistics on Human Language Technologies: Short Papers
Overview of BioNLP'09 shared task on event extraction
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
Extracting complex biological events with rich graph-based feature sets
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
Event extraction from trimmed dependency graphs
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
Biomedical event extraction without training data
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
A Markov logic approach to bio-molecular event extraction
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
Syntactic dependency based heuristics for biological event extraction
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
The CoNLL-2008 shared task on joint parsing of syntactic and semantic dependencies
CoNLL '08 Proceedings of the Twelfth Conference on Computational Natural Language Learning
The Stanford typed dependencies representation
CrossParser '08 Coling 2008: Proceedings of the workshop on Cross-Framework and Cross-Domain Parser Evaluation
Porting a lexicalized-grammar parser to the biomedical domain
Journal of Biomedical Informatics
Postnominal prepositional phrase attachment in proteomics
LNLBioNLP '06 Proceedings of the HLT-NAACL BioNLP Workshop on Linking Natural Language and Biology
Joint inference for knowledge extraction from biomedical literature
HLT '10 Human Language Technologies: The 2010 Annual Conference of the North American Chapter of the Association for Computational Linguistics
Overview of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Overview of Genia event task in BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Using Kybots for extracting events in biomedical texts
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
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This paper presents two strong baselines for the BioNLP 2009 shared task on event extraction. First we re-implement a rule-based approach which allows us to explore the task and the effect of domain-adapted parsing on it. We then replace the rule-based component with support vector machine classifiers and achieve performance near the state-of-the-art without using any external resources. The good performances achieved and the relative simplicity of both approaches make them reproducible baselines. We conclude with suggestions for future work with respect to the task representation.