Accurate unlexicalized parsing
ACL '03 Proceedings of the 41st Annual Meeting on Association for Computational Linguistics - Volume 1
Overview of BioNLP'09 shared task on event extraction
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
Extracting complex biological events with rich graph-based feature sets
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
A Markov logic approach to bio-molecular event extraction
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
BioNLP '07 Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing
Porting a lexicalized-grammar parser to the biomedical domain
Journal of Biomedical Informatics
Unbounded dependency recovery for parser evaluation
EMNLP '09 Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing: Volume 2 - Volume 2
A comparative study of syntactic parsers for event extraction
BioNLP '10 Proceedings of the 2010 Workshop on Biomedical Natural Language Processing
Any domain parsing: automatic domain adaptation for natural language parsing
Any domain parsing: automatic domain adaptation for natural language parsing
Developing a robust part-of-speech tagger for biomedical text
PCI'05 Proceedings of the 10th Panhellenic conference on Advances in Informatics
Towards exhaustive protein modification event extraction
BioNLP '11 Proceedings of BioNLP 2011 Workshop
Search-based structured prediction applied to biomedical event extraction
CoNLL '11 Proceedings of the Fifteenth Conference on Computational Natural Language Learning
Overview of the infectious diseases (ID) task of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
BioNLP Shared Task 2011: supporting resources
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Fast and robust joint models for biomedical event extraction
EMNLP '11 Proceedings of the Conference on Empirical Methods in Natural Language Processing
Tree kernel-based protein-protein interaction extraction from biomedical literature
Journal of Biomedical Informatics
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The detailed analyses of sentence structure provided by parsers have been applied to address several information extraction tasks. In a recent bio-molecular event extraction task, state-of-the-art performance was achieved by systems building specifically on dependency representations of parser output. While intrinsic evaluations have shown significant advances in both general and domain-specific parsing, the question of how these translate into practical advantage is seldom considered. In this paper, we analyze how event extraction performance is affected by parser and dependency representation, further considering the relation between intrinsic evaluation and performance at the extraction task. We find that good intrinsic evaluation results do not always imply good extraction performance, and that the types and structures of different dependency representations have specific advantages and disadvantages for the event extraction task.