Going weighted: Parameterized algorithms for cluster editing

  • Authors:
  • S. Böcker;S. Briesemeister;Q. B. A. Bui;A. Truss

  • Affiliations:
  • Lehrstuhl für Bioinformatik, Friedrich-Schiller-Universität Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany;Div. for Simulation of Biological Systems, ZBIT/WSI, Eberhard Karls Universität Tübingen, Germany;Lehrstuhl für Bioinformatik, Friedrich-Schiller-Universität Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany;Lehrstuhl für Bioinformatik, Friedrich-Schiller-Universität Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany

  • Venue:
  • Theoretical Computer Science
  • Year:
  • 2009

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Abstract

The goal of the Cluster Editing problem is to make the fewest changes to the edge set of an input graph such that the resulting graph is a disjoint union of cliques. This problem is NP-complete but recently, several parameterized algorithms have been proposed. In this paper, we present a number of surprisingly simple search tree algorithms for Weighted Cluster Editing assuming that edge insertion and deletion costs are positive integers. We show that the smallest search tree has size O(1.82^k) for edit cost k, resulting in the currently fastest parameterized algorithm, both for this problem and its unweighted counterpart. We have implemented and compared our algorithms, and achieved promising results.