Invitation to data reduction and problem kernelization
ACM SIGACT News
The multi-multiway cut problem
Theoretical Computer Science
Fourier meets möbius: fast subset convolution
Proceedings of the thirty-ninth annual ACM symposium on Theory of computing
Multiple Alignment of Biological Networks: A Flexible Approach
CPM '09 Proceedings of the 20th Annual Symposium on Combinatorial Pattern Matching
Going weighted: Parameterized algorithms for cluster editing
Theoretical Computer Science
ICALP'10 Proceedings of the 37th international colloquium conference on Automata, languages and programming
Proceedings of the forty-third annual ACM symposium on Theory of computing
Fixed-parameter tractability of multicut parameterized by the size of the cutset
Proceedings of the forty-third annual ACM symposium on Theory of computing
On making directed graphs transitive
Journal of Computer and System Sciences
Hi-index | 0.00 |
The NP-hard Colorful Components problem is, given a vertex-colored graph, to delete a minimum number of edges such that no connected component contains two vertices of the same color. It has applications in multiple sequence alignment and in multiple network alignment where the colors correspond to species. We initiate a systematic complexity-theoretic study of Colorful Components by presenting NP-hardness as well as fixed-parameter tractability results for different variants of Colorful Components. We also perform experiments with our algorithms and additionally develop an efficient and very accurate heuristic algorithm clearly outperforming a previous min-cut-based heuristic on multiple sequence alignment data.