The Ant System Applied to the Quadratic Assignment Problem
IEEE Transactions on Knowledge and Data Engineering
HAS-SOP: Hybrid Ant System for the Sequential Ordering Problem
HAS-SOP: Hybrid Ant System for the Sequential Ordering Problem
Ant colony system: a cooperative learning approach to the traveling salesman problem
IEEE Transactions on Evolutionary Computation
A short convergence proof for a class of ant colony optimizationalgorithms
IEEE Transactions on Evolutionary Computation
Ant system: optimization by a colony of cooperating agents
IEEE Transactions on Systems, Man, and Cybernetics, Part B: Cybernetics
A Bayesian regression approach to the prediction of MHC-II binding affinity
Computer Methods and Programs in Biomedicine
Multiple Instance Learning Allows MHC Class II Epitope Predictions Across Alleles
WABI '08 Proceedings of the 8th international workshop on Algorithms in Bioinformatics
Computers and Industrial Engineering
A novel kernel-based approach for predicting binding peptides for HLA class II molecules
ISBRA'07 Proceedings of the 3rd international conference on Bioinformatics research and applications
Quantitative prediction of MHC-II binding affinity using particle swarm optimization
Artificial Intelligence in Medicine
Motif finding using ant colony optimization
ANTS'10 Proceedings of the 7th international conference on Swarm intelligence
Artificial Intelligence in Medicine
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Objective:: Predictions of the binding ability of antigen peptides to major histocompatibility complex (MHC) class II molecules are important in vaccine development. The variable length of each binding peptide complicates this prediction. Methodology:: Motivated by the search properties of the ant colony system (ACS), a method for the identification of an alignment for a given set of short protein peptides has been developed. This alignment is further used for the derivation of a position specific scoring matrix. The distinguishing feature of this method is the use of the collective optimized search strategy of ants for the selection of the alignment. Results:: The performance of the new model has been evaluated with several benchmark datasets. It achieves better or comparable results as compared to the performance of existing methods. Conclusion:: The experiments demonstrate that the predictive performance of the scoring matrix embodies several promising characteristics.