Nodal Distance Algorithm: Calculating a Phylogenetic Tree Comparison Metric
BIBE '03 Proceedings of the 3rd IEEE Symposium on BioInformatics and BioEngineering
Phylogenetic Networks: Modeling, Reconstructibility, and Accuracy
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Computing the maximum agreement of phylogenetic networks
Theoretical Computer Science - Pattern discovery in the post genome
The Fine Structure of Galls in Phylogenetic Networks
INFORMS Journal on Computing
Newton's method and the Computational Complexity of the Fundamental Theorem of Algebra
Electronic Notes in Theoretical Computer Science (ENTCS)
Metrics for Phylogenetic Networks I: Generalizations of the Robinson-Foulds Metric
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Metrics for Phylogenetic Networks II: Nodal and Triplets Metrics
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Evolutionary design of oriented-tree networks using Cayley-type encodings
Information Sciences: an International Journal
Comparison of Tree-Child Phylogenetic Networks
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Beyond galled trees: decomposition and computation of galled networks
RECOMB'07 Proceedings of the 11th annual international conference on Research in computational molecular biology
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
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Hybridization networks are representations of evolutionary histories that allow for the inclusion of reticulate events like recombinations, hybridizations, or lateral gene transfers. The recent growth in the number of hybridization network reconstruction algorithms has led to an increasing interest in the definition of metrics for their comparison that can be used to assess the accuracy or robustness of these methods. In this paper we establish some basic results that make it possible the generalization to tree-child time consistent (TCTC) hybridization networks of some of the oldest known metrics for phylogenetic trees: those based on the comparison of the vectors of path lengths between leaves. More specifically, we associate to each hybridization network a suitably defined vector of 'splitted' path lengths between its leaves, and we prove that if two TCTC hybridization networks have the same such vectors, then they must be isomorphic. Thus, comparing these vectors by means of a metric for real-valued vectors defines a metric for TCTC hybridization networks. We also consider the case of fully resolved hybridization networks, where we prove that simpler, 'non-splitted' vectors can be used.