Phylogenetic Networks: Modeling, Reconstructibility, and Accuracy

Optimal, efficient reconstruction of root-unknown phylogenetic networks with constrained and structured recombination

Journal of Computer and System Sciences - Special issue on bioinformatics II

Reconstructing Phylogenetic Networks Using Maximum Parsimony

CSB '05 Proceedings of the 2005 IEEE Computational Systems Bioinformatics Conference

Unicyclic Networks: Compatibility and Enumeration

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

An efficiently computed lower bound on the number of recombinations in phylogenetic networks: Theory and empirical study

Discrete Applied Mathematics

Discovering Frequent Agreement Subtrees from Phylogenetic Data

IEEE Transactions on Knowledge and Data Engineering

Clustered SplitsNetworks

COCOA 2008 Proceedings of the 2nd international conference on Combinatorial Optimization and Applications

Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer

RECOMB-CG '08 Proceedings of the international workshop on Comparative Genomics

Metrics for Phylogenetic Networks I: Generalizations of the Robinson-Foulds Metric

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

Counting Faces in Split Networks

ISBRA '09 Proceedings of the 5th International Symposium on Bioinformatics Research and Applications

Efficiently Calculating Evolutionary Tree Measures Using SAT

SAT '09 Proceedings of the 12th International Conference on Theory and Applications of Satisfiability Testing

Metrics for Phylogenetic Networks II: Nodal and Triplets Metrics

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

Parsimony Score of Phylogenetic Networks: Hardness Results and a Linear-Time Heuristic

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

Path lengths in tree-child time consistent hybridization networks

Information Sciences: an International Journal

Comparison of Tree-Child Phylogenetic Networks

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

On Nakhleh's Metric for Reduced Phylogenetic Networks

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

Constructing Level-2 Phylogenetic Networks from Triplets

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

A new linear-time heuristic algorithm for computing the parsimony score of phylogenetic networks: theoretical bounds and empirical performance

ISBRA'07 Proceedings of the 3rd international conference on Bioinformatics research and applications

A Metric on the Space of Reduced Phylogenetic Networks

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

Reassortment Networks for Investigating the Evolution of Segmented Viruses

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

Constructing level-2 phylogenetic networks from triplets

RECOMB'08 Proceedings of the 12th annual international conference on Research in computational molecular biology

Beyond evolutionary trees

Natural Computing: an international journal

Comparison of Galled Trees

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

The Plexus Model for the Inference of Ancestral Multidomain Proteins

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

An evolutionary approach to the inference of phylogenetic networks

PPSN'06 Proceedings of the 9th international conference on Parallel Problem Solving from Nature

Phylogenetic network inferences through efficient haplotyping

WABI'06 Proceedings of the 6th international conference on Algorithms in Bioinformatics

RIATA-HGT: a fast and accurate heuristic for reconstructing horizontal gene transfer

COCOON'05 Proceedings of the 11th annual international conference on Computing and Combinatorics

Fast algorithms for computing the tripartition-based distance between phylogenetic networks

ISAAC'05 Proceedings of the 16th international conference on Algorithms and Computation

A fundamental decomposition theory for phylogenetic networks and incompatible characters

RECOMB'05 Proceedings of the 9th Annual international conference on Research in Computational Molecular Biology

Phylogenetic networks, trees, and clusters

ICCS'05 Proceedings of the 5th international conference on Computational Science - Volume Part II

Biomonitoring, phylogenetics and anomaly aggregation systems

ISI'05 Proceedings of the 2005 IEEE international conference on Intelligence and Security Informatics

Identifiability issues in phylogeny-based detection of horizontal gene transfer

RCG'06 Proceedings of the RECOMB 2006 international conference on Comparative Genomics

Inferring evolutionary scenarios for protein domain compositions

ISBRA'10 Proceedings of the 6th international conference on Bioinformatics Research and Applications

Phylogenetic networks: properties and relationship to trees and clusters

Transactions on Computational Systems Biology II

Faster computation of the Robinson-Foulds distance between phylogenetic networks

Information Sciences: an International Journal

CSD Homomorphisms between Phylogenetic Networks

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

All-pairs ancestor problems inweighted dags

ESCAPE'07 Proceedings of the First international conference on Combinatorics, Algorithms, Probabilistic and Experimental Methodologies

On the complexity of computing the temporal hybridization number for two phylogenies

Discrete Applied Mathematics