Non-interleaving semantics for mobile processes
Theoretical Computer Science
Communicating and mobile systems: the &pgr;-calculus
Communicating and mobile systems: the &pgr;-calculus
Handbook of Process Algebra
FoSSaCS '98 Proceedings of the First International Conference on Foundations of Software Science and Computation Structure
Modelling biochemical pathways through enhanced π-calculus
Theoretical Computer Science - Special issue: Computational systems biology
BioAmbients: an abstraction for biological compartments
Theoretical Computer Science - Special issue: Computational systems biology
Beta binders for biological interactions
CMSB'04 Proceedings of the 20 international conference on Computational Methods in Systems Biology
CMSB'04 Proceedings of the 20 international conference on Computational Methods in Systems Biology
Operational patterns in beta-binders
Transactions on Computational Systems Biology I
Modelling Biological Compartments in Bio-PEPA
Electronic Notes in Theoretical Computer Science (ENTCS)
A Control Flow Analysis for Beta-binders with and without static compartments
Theoretical Computer Science
The attributed pi-calculus with priorities
Transactions on Computational Systems Biology XII
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We investigate the modeling of biological systems with static compartments through Beta-binders, a recently developed process calculus. Biological entities are represented as bio-processes and the calculus is extended with the notion of compartment. Entities can either be internal to compartments or reside on compartment borders. Movement in and out of compartments is requested by internal objects and mediated by border objects. The extended calculus is equipped with the notion of locality, and various kinds of relations between actions are defined. Moreover, we compare our proposal with similar formalisms and we show how to use the proposed calculus for modeling and analyzing the cAMP-signaling pathway in OSNs.