The algorithmic beauty of plants
The algorithmic beauty of plants
Visual models of plants interacting with their environment
SIGGRAPH '96 Proceedings of the 23rd annual conference on Computer graphics and interactive techniques
Incorporating knowledge of secondary structures in a l-system-based encoding for protein folding
EA'05 Proceedings of the 7th international conference on Artificial Evolution
Evolving l-systems to capture protein structure native conformations
EuroGP'05 Proceedings of the 8th European conference on Genetic Programming
Cotranslational protein folding with L-systems
ECAL'09 Proceedings of the 10th European conference on Advances in artificial life: Darwin meets von Neumann - Volume Part I
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Proteins, under native conditions, fold to specific 3D structures according to their 1D amino acid sequence, which in turn is defined by the genetic code. The specific shape of a folded protein is a strong indicator of its function in the cell. The mechanisms involved in protein folding are not well understood and predicting the final conformation of a folded protein from its amino acid sequence alone is not yet achievable despite extensive research efforts, both theoretical and experimental. The protein folding process may be viewed as an emergent phenomenon, a result of underlying physics controlling the interaction of amino acids with their local environment, leading to the complex global fold. In this spirit we present a model for investigating protein folding using open L-systems, local rewriting rules with environmental interaction.