Approximating probabilistic inference in Bayesian belief networks is NP-hard
Artificial Intelligence
Machine Learning - Special issue on learning with probabilistic representations
Modeling dependencies in protein-DNA binding sites
RECOMB '03 Proceedings of the seventh annual international conference on Research in computational molecular biology
Pattern Classification (2nd Edition)
Pattern Classification (2nd Edition)
Learning Bayesian network classifiers by maximizing conditional likelihood
ICML '04 Proceedings of the twenty-first international conference on Machine learning
Non-additivity in protein--DNA binding
Bioinformatics
Full Bayesian network classifiers
ICML '06 Proceedings of the 23rd international conference on Machine learning
Learning Bayesian Networks Consistent with the Optimal Branching
ICMLA '07 Proceedings of the Sixth International Conference on Machine Learning and Applications
A feature-based approach to modeling protein-DNA interactions
RECOMB'07 Proceedings of the 11th annual international conference on Research in computational molecular biology
Simple Bayesian classifiers do not assume independence
AAAI'96 Proceedings of the thirteenth national conference on Artificial intelligence - Volume 2
UAI'99 Proceedings of the Fifteenth conference on Uncertainty in artificial intelligence
Discriminative Learning of Bayesian Networks via Factorized Conditional Log-Likelihood
The Journal of Machine Learning Research
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We introduce a Bayesian network classifier less restrictive than Naive Bayes (NB) and Tree Augmented Naive Bayes (TAN) classifiers. Considering that learning an unrestricted network is unfeasible the proposed classifier is confined to be consistent with the breadth-first search order of an optimal TAN. We propose an efficient algorithm to learn such classifiers for any score that decompose over the network structure, including the well known scores based on information theory and Bayesian scoring functions. We show that the induced classifier always scores better than or the same as the NB and TAN classifiers. Experiments on modeling transcription factor binding sites show that, in many cases, the improved scores translate into increased classification accuracy.