Verification of Real-Time Systems using Linear Relation Analysis
Formal Methods in System Design - Special issue on computer aided verification (CAV 93)
Model checking
SIAM Journal on Numerical Analysis
Characterizing Correctness Properties of Parallel Programs Using Fixpoints
Proceedings of the 7th Colloquium on Automata, Languages and Programming
Model Checking as Constraint Solving
SAS '00 Proceedings of the 7th International Symposium on Static Analysis
Verifying Systems with Infinite but Regular State Spaces
CAV '98 Proceedings of the 10th International Conference on Computer Aided Verification
CAV '00 Proceedings of the 12th International Conference on Computer Aided Verification
Symbolic Model Checking of Infinite State Systems Using Presburger Arithmetic
CAV '97 Proceedings of the 9th International Conference on Computer Aided Verification
Design and Synthesis of Synchronization Skeletons Using Branching-Time Temporal Logic
Logic of Programs, Workshop
Symbolic Model Checking of Biochemical Networks
CMSB '03 Proceedings of the First International Workshop on Computational Methods in Systems Biology
HYTECH: A Model Checker for Hybrid Systems
CAV '97 Proceedings of the 9th International Conference on Computer Aided Verification
General decidability theorems for infinite-state systems
LICS '96 Proceedings of the 11th Annual IEEE Symposium on Logic in Computer Science
Completely Derandomized Self-Adaptation in Evolution Strategies
Evolutionary Computation
Robustness analysis and tuning of synthetic gene networks
Bioinformatics
The temporal logic of programs
SFCS '77 Proceedings of the 18th Annual Symposium on Foundations of Computer Science
On temporal logic constraint solving for analyzing numerical data time series
Theoretical Computer Science
Probabilistic model checking of complex biological pathways
CMSB'06 Proceedings of the 2006 international conference on Computational Methods in Systems Biology
Analysis of signalling pathways using continuous time markov chains
Transactions on Computational Systems Biology VI
Machine learning biochemical networks from temporal logic properties
Transactions on Computational Systems Biology VI
CMSB '09 Proceedings of the 7th International Conference on Computational Methods in Systems Biology
Robust satisfaction of temporal logic over real-valued signals
FORMATS'10 Proceedings of the 8th international conference on Formal modeling and analysis of timed systems
Constraint programming on infinite data streams
IJCAI'11 Proceedings of the Twenty-Second international joint conference on Artificial Intelligence - Volume Volume One
Parametric identification of temporal properties
RV'11 Proceedings of the Second international conference on Runtime verification
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In this paper, we show how model-checking can be generalized to temporal logic constraint solving, by considering temporal logic formulae with free variables over some domain D, and by computing a validity domain for the variables rather than a truth value for the formula. This allows us to define a continuous degree of satisfaction for a temporal logic formula in a given structure, opening up the field of model-checking to optimization. We illustrate this approach with reverse-engineering problems coming from systems biology, and provide some performance figures on parameter optimization problems with respect to temporal logic specifications.