Multi-contrast deep nuclei segmentation using a probabilistic atlas

  • Authors:
  • Linda Marrakchi-Kacem;Cyril Poupon;Jean-François Mangin;Fabrice Poupon

  • Affiliations:
  • NeuroSpin, CEA, Gif-Sur-Yvette, France;NeuroSpin, CEA, Gif-Sur-Yvette, France;NeuroSpin, CEA, Gif-Sur-Yvette, France;NeuroSpin, CEA, Gif-Sur-Yvette, France

  • Venue:
  • ISBI'10 Proceedings of the 2010 IEEE international conference on Biomedical imaging: from nano to Macro
  • Year:
  • 2010

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Abstract

In this paper we propose a new hybrid segmentation approach of the deep brain structures based on a multicontrast deformable model of regions in competition, with deformations preserving the topology of the structures, as well as their shape and position, using a probabilistic atlas and some prior morphological information. The accuracy of our method was evaluated by comparing the results obtained on a base of T1-weighted data contrast with those of FREESURFER and FSL-FIRST. Besides giving very good results from only one contrast, we show that the multi-contrast aspect of our method allows exploiting the complementary contributions of different contrasts, like T1 and diffusion tensor (DT) contrasts, in order to provide a more robust segmentation.