Workflows for parameter studies of multi-cell modeling

Authors:
Randy Heiland;Maciek Swat;Benjamin Zaitlen;James Glazier;Andrew Lumsdaine
Affiliations:
Indiana University, Bloomington, IN;Indiana University, Bloomington, IN;Indiana University, Bloomington, IN;Indiana University, Bloomington, IN;Indiana University, Bloomington, IN
Venue:
SpringSim '10 Proceedings of the 2010 Spring Simulation Multiconference
Year:
2010

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Abstract

Running simulations for multi-cell tissue models can involve numerous parameters and consume considerable computing resources. This paper presents an overview and use case of two open source projects - CompuCell3D, a multi-cell modeling framework, and VisTrails, a workflow system for parameter exploration and data management.