From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development

Authors:
Trevor Cickovski;Kedar Aras;Maciej Swat;Roeland M. H. Merks;Tilmann Glimm;H. George E. Hentschel;Mark S. Alber;James A. Glazier;Stuart A. Newman;Jesus A. Izaguirre
Affiliations:
University of Notre Dame;University of Notre Dame;Indiana University;Flanders Institute for Biotechnology and Ghent University;Western Washington University;Emory University;University of Notre Dame;Indiana University;New York Medical College;University of Notre Dame
Venue:
Computing in Science and Engineering
Year:
2007

Citing 5
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Abstract

To gain performance, developers often build scientific applications in procedural languages, such as C or Fortran, which unfortunately reduces flexibility. To address this imbalance, the authors present CompuCell3D, a multitiered, flexible, and scalable problem-solving environment for morphogenesis simulations that's written in C++ using object-oriented design patterns.