Graph drawing by force-directed placement
Software—Practice & Experience
Navigating hierarchically clustered networks through fisheye and full-zoom methods
ACM Transactions on Computer-Human Interaction (TOCHI)
An open graph visualization system and its applications to software engineering
Software—Practice & Experience - Special issue on discrete algorithm engineering
Integrating communication and information through ContactMap
Communications of the ACM - Supporting community and building social capital
Graph Drawing: Algorithms for the Visualization of Graphs
Graph Drawing: Algorithms for the Visualization of Graphs
Domain visualization using VxInsight for science and technology management
Journal of the American Society for Information Science and Technology
Ordered and quantum treemaps: Making effective use of 2D space to display hierarchies
ACM Transactions on Graphics (TOG)
IEEE Transactions on Visualization and Computer Graphics
Graph Visualization and Navigation in Information Visualization: A Survey
IEEE Transactions on Visualization and Computer Graphics
Multilevel Visualization of Clustered Graphs
GD '96 Proceedings of the Symposium on Graph Drawing
Exploring semantic groups through visual approaches
Journal of Biomedical Informatics - Special issue: Unified medical language system
Mapping Medline Papers, Genes, and Proteins Related to Melanoma Research
IV '04 Proceedings of the Information Visualisation, Eighth International Conference
prefuse: a toolkit for interactive information visualization
Proceedings of the SIGCHI Conference on Human Factors in Computing Systems
ProViz: protein interaction visualization and exploration
Bioinformatics
Journal of the American Society for Information Science and Technology
PathBank: Web-Based Querying and Visualziation of an Integrated Biological Pathway Database
CGIV '06 Proceedings of the International Conference on Computer Graphics, Imaging and Visualisation
Network Visualization by Semantic Substrates
IEEE Transactions on Visualization and Computer Graphics
Tools for visually exploring biological networks
Bioinformatics
Designing semantic substrates for visual network exploration
Information Visualization
Improved Layout of Phylogenetic Networks
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Genomic Spring-Synteny Visualization with IMAS
MEDIVIS '08 Proceedings of the 2008 Fifth International Conference BioMedical Visualization: Information Visualization in Medical and Biomedical Informatics
Visualizing the Gene Ontology-Annotated Clusters of Co-expressed Genes: A Two-Design Study
MEDIVIS '08 Proceedings of the 2008 Fifth International Conference BioMedical Visualization: Information Visualization in Medical and Biomedical Informatics
VisPad: Integrating Visualization, Navigation and Synthesis
VAST '07 Proceedings of the 2007 IEEE Symposium on Visual Analytics Science and Technology
Visual overviews for discovering key papers and influences across research fronts
Journal of the American Society for Information Science and Technology
Exploring the corporate ecosystem with a semi-supervised entity graph
Proceedings of the 20th ACM international conference on Information and knowledge management
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Though biomedical research often draws on knowledge from a wide variety of fields, few visualization methods for biomedical data incorporate meaningful cross-database exploration. A new approach is offered for visualizing and exploring a query-based subset of multiple heterogeneous biomedical databases. Databases are modeled as an entity-relation graph containing nodes (database records) and links (relationships between records). Users specify a keyword search string to retrieve an initial set of nodes, and then explore intra- and interdatabase links. Results are visualized with user-defined semantic substrates to take advantage of the rich set of attributes usually present in biomedical data. Comments from domain experts indicate that this visualization method is potentially advantageous for biomedical knowledge exploration.