SIAM Journal on Discrete Mathematics
Discrete Mathematics
Genome Rearrangements and Sorting by Reversals
SIAM Journal on Computing
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SIAM Journal on Discrete Mathematics
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Information and Computation
The 1.375 approximation algorithm for sorting by transpositions can run in O(n log n) time
WALCOM'10 Proceedings of the 4th international conference on Algorithms and Computation
Bounds on the transposition distance for lonely permutations
BSB'10 Proceedings of the Advances in bioinformatics and computational biology, and 5th Brazilian conference on Bioinformatics
Analysis and implementation of sorting by transpositions using permutation trees
BSB'11 Proceedings of the 6th Brazilian conference on Advances in bioinformatics and computational biology
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H. Eriksson et al. made a breakthrough to the problem of sorting by transpositions by proposing a quotient structure named toric graph, which allowed the reduction of the search space, establishing the transposition diameter $D_t(n)=\lfloor\frac{n+1}{2}\rfloor+1$, for the cases $n=13$ and $n=15$, and invalidating a conjecture by J. Meidanis, M. E. M. T. Walter, and Z. Dias that the transposition diameter would be equal to the transposition distance of the reverse permutation $\lfloor n/2\rfloor+1$. I. Elias and T. Hartman extended the lower bound $D_t(n)\geq\lfloor\frac{n+1}{2}\rfloor+1$, to all odd values of $n$, $n\geq13$. The value $n=15$ is the largest for which $D_t(n)$ is known. The goal of the present paper is to further study the toric graph, focusing on the case when $n+1$ is prime, providing positive evidence that J. Meidanis, M. E. M. T. Walter, and Z. Dias's conjecture is still valid when $n$ is even. We show that, when $n+1$ is prime, the properties of the reverse permutation are shared by permutations that fall into unitary toric classes; we prove that their reality and desire diagrams have just one cycle, consequently proving that those permutations are separated by at least $n/2$ transpositions among themselves, and we show that there are at least two permutations whose transposition distance is $n/2$ and two permutations, other than the reverse, whose distance is at least $n/2+1$, with respect to the identity.