On the Elusiveness of Clusters
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
RECOMB'12 Proceedings of the 16th Annual international conference on Research in Computational Molecular Biology
The Complexity of Inferring A Minimally Resolved Phylogenetic Supertree
SIAM Journal on Computing
Asymptotic limits of a new type of maximization recurrence with an application to bioinformatics
TAMC'12 Proceedings of the 9th Annual international conference on Theory and Applications of Models of Computation
Computing the rooted triplet distance between galled trees by counting triangles
CPM'12 Proceedings of the 23rd Annual conference on Combinatorial Pattern Matching
A practical approximation algorithm for solving massive instances of hybridization number
WABI'12 Proceedings of the 12th international conference on Algorithms in Bioinformatics
An algorithm for constructing parsimonious hybridization networks with multiple phylogenetic trees
RECOMB'13 Proceedings of the 17th international conference on Research in Computational Molecular Biology
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Temporal Logics for Phylogenetic Analysis via Model Checking
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Computing the rooted triplet distance between galled trees by counting triangles
Journal of Discrete Algorithms
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The evolutionary history of species is traditionally represented using a rooted phylogenetic tree. However, when reticulate events such as hybridization, horizontal gene transfer or recombination are believed to be involved, phylogenetic networks that can accommodate non-treelike evolution have an important role to play. This book provides the first interdisciplinary overview of phylogenetic networks. Beginning with a concise introduction to both phylogenetic trees and phylogenetic networks, the fundamental concepts and results are then presented for both rooted and unrooted phylogenetic networks. Current approaches and algorithms available for computing phylogenetic networks from different types of datasets are then discussed, accompanied by examples of their application to real biological datasets. The book also summarises the algorithms used for drawing phylogenetic networks, along with the existing software for their computation and evaluation. All datasets, examples and other additional information and links are available from the book's companion website at www.phylogenetic-networks.org.