Theoretical study of 3-D molecular similarity and ligand binding modes of orthologous human and rat D2 dopamine receptors

  • Authors:
  • Marvin A. Soriano-Ursúa;Jorge O. Ocampo-López;Karina Ocampo-Mendoza;José G. Trujillo-Ferrara;José Correa-Basurto

  • Affiliations:
  • Departamento de Bioquímica, Escuela Superior de Medicina, Instituto Politécnico Nacional, Plan de San Luis y Díaz Mirón, 11340 México, Mexico and Departamento de Fisiolog& ...;Laboratorio Médico Químico Biológico, Reforma 9, Col. Atlántida, Del. Coyoacán, 04370 México, Mexico;Laboratorio Médico Químico Biológico, Reforma 9, Col. Atlántida, Del. Coyoacán, 04370 México, Mexico;Departamento de Bioquímica, Escuela Superior de Medicina, Instituto Politécnico Nacional, Plan de San Luis y Díaz Mirón, 11340 México, Mexico and Laboratorio de Modelado M ...;Departamento de Bioquímica, Escuela Superior de Medicina, Instituto Politécnico Nacional, Plan de San Luis y Díaz Mirón, 11340 México, Mexico and Laboratorio de Modelado M ...

  • Venue:
  • Computers in Biology and Medicine
  • Year:
  • 2011

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Abstract

The D"2 dopamine receptor (D"2DR) is an important target for the treatment of some central nervous system disorders, such as Parkinson disease, schizophrenia and drug-dependence. In this work, we built 3-D models of the long form of human and rat D"2DRs by considering data from the crystallized D3 dopamine receptor, @b2 adrenoceptor and A2a adenosine receptor as templates. Then, docking was performed with ligand and protein residue flexibility. These results were used to analyze ligand recognition and estimate binding affinity. Our results show that the predicted ligand affinity correlates with experimental data, and binding modes are very similar between the D"2DRs of these two species.