Simulation and visualization for DNA computing in microreactors

Authors:
Danny van Noort;Yuan Hong;Joseph Ibershoff;Jerzy W. Jaromczyk
Affiliations:
Biointelligence Lab., School of Computer Science and Engineering, Seoul National University, Seoul, Korea;Department of Computer Science, University of Kentucky, Lexington, KY;Department of Computer Science, University of Kentucky, Lexington, KY;Department of Computer Science, University of Kentucky, Lexington, KY
Venue:
ICNC'05 Proceedings of the First international conference on Advances in Natural Computation - Volume Part II
Year:
2005

Citing 1
Cited 1

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DNA'06 Proceedings of the 12th international conference on DNA Computing

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Abstract

A simulation program is a useful tool to predict the hybridization error propagated through a microfluidic system. This paper shows the hybridization event between solution strands and capture probes. The program provides a Graphical User Interface that allows the user to insert parameters as well as to observe results showing critical values and additional visualization of the simulation process. The program and its interface have been developed in Java, making it platform independent and web-based.