Computer simulation of liquids
Computer simulation of liquids
Symplectic numerical integrators in constrained Hamiltonian systems
Journal of Computational Physics
Understanding Molecular Simulation
Understanding Molecular Simulation
Strong Convergence of Euler-Type Methods for Nonlinear Stochastic Differential Equations
SIAM Journal on Numerical Analysis
Numerical Integration of Stochastic Differential Equations with Nonglobally Lipschitz Coefficients
SIAM Journal on Numerical Analysis
GSHMC: An efficient method for molecular simulation
Journal of Computational Physics
Stability of asynchronous variational integrators
Journal of Computational Physics
A comparison of generalized hybrid Monte Carlo methods with and without momentum flip
Journal of Computational Physics
Multilevel Monte Carlo Path Simulation
Operations Research
Long-Run Accuracy of Variational Integrators in the Stochastic Context
SIAM Journal on Numerical Analysis
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This paper extends the results in [8] to stochastic differential equations (SDEs) arising in molecular dynamics. It implements a patch to explicit integrators that consists of a Metropolis-Hastings step. The 'patched integrator' preserves the SDE's equilibrium distribution and is accurate on finite time intervals. As a corollary this paper proves the integrator's accuracy in estimating finite-time dynamics along an infinitely long solution - a first in molecular dynamics. The paper also covers multiple time-steps, holonomic constraints and scalability. Finally, the paper provides numerical tests supporting the theory.