Computing bounded-degree phylogenetic roots of disconnected graphs

  • Authors:
  • Zhi-Zhong Chen;Tatsuie Tsukiji

  • Affiliations:
  • Dept. of Math. Sci., Tokyo Denki Univ., Hatoyama, Saitama, Japan;Dept. of Info. Sci., Tokyo Denki Univ., Hatoyama, Saitama, Japan

  • Venue:
  • WG'04 Proceedings of the 30th international conference on Graph-Theoretic Concepts in Computer Science
  • Year:
  • 2004

Quantified Score

Hi-index 0.00

Visualization

Abstract

The Phylogenetic kth Root Problem (PRk) is theproblem of finding a (phylogenetic) tree T from a given graph G=(V,E) such that (1) T has no degree-2 internal nodes, (2) the external nodes (i.e. leaves) of T are exactly the elements of V, and (3) (u, v) ∈ E if and only if the distance between u and v in tree T is at most k, where k is some fixed threshold k. Such a tree T, if exists, is called a phylogenetickth root of graph G. The computational complexity of PRk is open, except for k ≤ 4. Recently, Chen et al. investigated PRk under a natural restriction that the maximum degree of the phylogenetic root is bounded from above by a constant. They presented a linear-time algorithm that determines if a given connectedG has such a phylogenetic kth root, and if so, demonstrates one. In this paper, we supplement their work by presenting a linear-time algorithm for disconnected graphs.