Randomized group testing both query-optimal and minimal adaptive

  • Authors:
  • Peter Damaschke;Azam Sheikh Muhammad

  • Affiliations:
  • Department of Computer Science and Engineering, Chalmers University, Göteborg, Sweden;Department of Computer Science and Engineering, Chalmers University, Göteborg, Sweden

  • Venue:
  • SOFSEM'12 Proceedings of the 38th international conference on Current Trends in Theory and Practice of Computer Science
  • Year:
  • 2012

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Abstract

The classical group testing problem asks to determine at most d defective elements in a set of n elements, by queries to subsets that return Yes if the subset contains some defective, and No if the subset is free of defectives. By the entropy lower bound, $\log_2\sum_{i=0}^d{n\choose i}$ tests, which is essentially d log2 n , are needed at least. We devise group testing strategies that combine two features: They achieve this optimal query bound asymptotically, with a factor 1+o (1) as n grows, and they work in a fixed number of stages of parallel queries. Our strategies are randomized and have a controlled failure probability, i.e., constant but arbitrarily small. We consider different settings (known or unknown d , probably correct or verified outcome), and we aim at the smallest possible number of stages. In particular, 2 stages are sufficient if d grows slowly enough with n , and 4 stages are sufficient if d =o (n ).