Information modeling and relational databases: from conceptual analysis to logical design
Information modeling and relational databases: from conceptual analysis to logical design
Towards a standard upper ontology
Proceedings of the international conference on Formal Ontology in Information Systems - Volume 2001
Building a Chemical Ontology Using Methontology and the Ontology Design Environment
IEEE Intelligent Systems
A Temporal Description Logic for Reasoning over Conceptual Schemas and Queries
JELIA '02 Proceedings of the European Conference on Logics in Artificial Intelligence
ε-connections of abstract description systems
Artificial Intelligence
A reference ontology for biomedical informatics: the foundational model of anatomy
Journal of Biomedical Informatics - Special issue: Unified medical language system
An ontology of time for the semantic web
ACM Transactions on Asian Language Information Processing (TALIP) - Special Issue on Temporal Information Processing
ACM Transactions on Database Systems (TODS)
Handbook of Spatial Logics
Temporalising Tractable Description Logics
TIME '07 Proceedings of the 14th International Symposium on Temporal Representation and Reasoning
Tools for visually exploring biological networks
Bioinformatics
Managing uncertainty and vagueness in description logics for the Semantic Web
Web Semantics: Science, Services and Agents on the World Wide Web
Applied Ontology - Towards a Metaontology for the Biomedical Domain
MoKi: The Enterprise Modelling Wiki
ESWC 2009 Heraklion Proceedings of the 6th European Semantic Web Conference on The Semantic Web: Research and Applications
The Ontological Level: Revisiting 30 Years of Knowledge Representation
Conceptual Modeling: Foundations and Applications
Automatic Extraction of Ontologies Wrapping Relational Data Sources
DEXA '09 Proceedings of the 20th International Conference on Database and Expert Systems Applications
Semantic foundations of medical information systems based on top-level ontologies
Knowledge-Based Systems
Combining OWL ontologies using E-Connections
Web Semantics: Science, Services and Agents on the World Wide Web
Web-based graphical querying of databases through an ontology: the Wonder system
Proceedings of the 2010 ACM Symposium on Applied Computing
Journal on data semantics X
The Description Logic Handbook: Theory, Implementation and Applications
The Description Logic Handbook: Theory, Implementation and Applications
Dependencies between ontology design parameters
International Journal of Metadata, Semantics and Ontologies
Using text to build semantic networks for pharmacogenomics
Journal of Biomedical Informatics
Integrated metamodeling and diagnosis in OWL 2
ISWC'10 Proceedings of the 9th international semantic web conference on The semantic web - Volume Part I
Journal of Biomedical Informatics
Cross-product extensions of the Gene Ontology
Journal of Biomedical Informatics
The use of foundational ontologies in ontology development: an empirical assessment
ESWC'11 Proceedings of the 8th extended semantic web conference on The semantic web: research and applications - Volume Part I
Factors affecting ontology development in ecology
DILS'05 Proceedings of the Second international conference on Data Integration in the Life Sciences
ONSET: automated foundational ontology selection and explanation
EKAW'12 Proceedings of the 18th international conference on Knowledge Engineering and Knowledge Management
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Bio-ontology development is a resource-consuming task despite the many open source ontologies available for reuse. Various strategies and tools for bottom-up ontology development have been proposed from a computing angle, yet the most obvious one from a domain expert perspective is unexplored: the abundant diagrams in the sciences. To speed up and simplify bio-ontology development, we propose a detailed, micro-level, procedure, DiDOn, to formalise such semi-structured biological diagrams availing also of a foundational ontology for more precise and interoperable subject domain semantics. The approach is illustrated using Pathway Studio as case study.