Workflows for e-Science: Scientific Workflows for Grids
Workflows for e-Science: Scientific Workflows for Grids
Pegasus: A framework for mapping complex scientific workflows onto distributed systems
Scientific Programming
IAAI'07 Proceedings of the 19th national conference on Innovative applications of artificial intelligence - Volume 2
SHARE: A Semantic Web Query Engine for Bioinformatics
ASWC '09 Proceedings of the 4th Asian Conference on The Semantic Web
Bioinformatics
Pattern recognition for high throughput zebrafish imaging using genetic algorithm optimization
PRIB'10 Proceedings of the 5th IAPR international conference on Pattern recognition in bioinformatics
Tools in scientific workflow composition
ISoLA'10 Proceedings of the 4th international conference on Leveraging applications of formal methods, verification, and validation - Volume Part I
Semantically-guided workflow construction in Taverna: the SADI and BioMoby plug-ins
ISoLA'10 Proceedings of the 4th international conference on Leveraging applications of formal methods, verification, and validation - Volume Part I
Workflow composition and enactment using jORCA
ISoLA'10 Proceedings of the 4th international conference on Leveraging applications of formal methods, verification, and validation - Volume Part I
HIS'12 Proceedings of the First international conference on Health Information Science
ISoLA'12 Proceedings of the 5th international conference on Leveraging Applications of Formal Methods, Verification and Validation: applications and case studies - Volume Part II
Segmentation for high-throughput image analysis: watershed masked clustering
ISoLA'12 Proceedings of the 5th international conference on Leveraging Applications of Formal Methods, Verification and Validation: applications and case studies - Volume Part II
Efficient and robust shape retrieval from deformable templates
ISoLA'12 Proceedings of the 5th international conference on Leveraging Applications of Formal Methods, Verification and Validation: applications and case studies - Volume Part II
OWL-DL domain-models as abstract workflows
ISoLA'12 Proceedings of the 5th international conference on Leveraging Applications of Formal Methods, Verification and Validation: applications and case studies - Volume Part II
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With more than 200 different types of "-omic" data [1] spanning from submolecular, through molecular, cell, cell-systems, tissues, organs, phenotypes, gene-environment interactions, and ending at ecology and organism communities, the problem and complexity of bioscientific data processing has never been greater. Often data are generated in high-throughput studies with the aim to have a sufficient volume to find patterns and detect rare events. For these highthroughput approaches new methods have to be developed in order to assure integrity of the volume of data that is produced. At the same time efforts to integrate these widely-varying data types are underway in research fields such as systems biology. Systems-level research requires yet additional methodologies to pipeline, process, query, and interpret data, and such pipelines are, themselves, objects of scientific value if they can be re-used or re-purposed by other researchers.