Compiling program control flows into biochemical reactions

Authors:
De-An Huang;Jie-Hong R. Jiang;Ruei-Yang Huang;Chi-Yun Cheng
Affiliations:
National Taiwan University, Taipei, Taiwan;National Taiwan University, Taipei, Taiwan;National Taiwan University, Taipei, Taiwan;National Taiwan University, Taipei, Taiwan
Venue:
Proceedings of the International Conference on Computer-Aided Design
Year:
2012

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Abstract

Computing with biochemical reactions emerges in synthetic biology. With high-level programming languages, a target computation can be intuitively and effectively specified. As control flows form the skeleton of most programs, how to translate them into biochemical reactions is crucial but remains ad hoc. This paper shows a systematic approach to transforming control flows into robust molecular reactions. Case studies demonstrate its usefulness.