Multilevel k-way partitioning scheme for irregular graphs
Journal of Parallel and Distributed Computing
A Fast and High Quality Multilevel Scheme for Partitioning Irregular Graphs
SIAM Journal on Scientific Computing
Harness: a next generation distributed virtual machine
Future Generation Computer Systems - Special issue on metacomputing
A survey of rollback-recovery protocols in message-passing systems
ACM Computing Surveys (CSUR)
An $\cal O(N)$ Level Set Method for Eikonal Equations
SIAM Journal on Scientific Computing
Converse: An Interoperable Framework for Parallel Programming
IPPS '96 Proceedings of the 10th International Parallel Processing Symposium
Data Sieving and Collective I/O in ROMIO
FRONTIERS '99 Proceedings of the The 7th Symposium on the Frontiers of Massively Parallel Computation
Parallel I/O scheduling using randomized, distributed edge coloring algorithms
Journal of Parallel and Distributed Computing
FTC-Charm++: an in-memory checkpoint-based fault tolerant runtime for Charm++ and MPI
CLUSTER '04 Proceedings of the 2004 IEEE International Conference on Cluster Computing
PPM: a highly efficient parallel particle-mesh library for the simulation of continuum systems
Journal of Computational Physics
Sequoia: programming the memory hierarchy
Proceedings of the 2006 ACM/IEEE conference on Supercomputing
Sequoia: programming the memory hierarchy
Proceedings of the 2006 ACM/IEEE conference on Supercomputing
An immersed boundary method for smoothed particle hydrodynamics of self-propelled swimmers
Journal of Computational Physics
Library generation for linear transforms
Library generation for linear transforms
Vortex Methods for Massively Parallel Computer Architectures
High Performance Computing for Computational Science - VECPAR 2008
Communication-Sensitive Static Dataflow for Parallel Message Passing Applications
Proceedings of the 7th annual IEEE/ACM International Symposium on Code Generation and Optimization
Scalable fault tolerant protocol for parallel runtime environments
EuroPVM/MPI'06 Proceedings of the 13th European PVM/MPI User's Group conference on Recent advances in parallel virtual machine and message passing interface
A software framework for the portable parallelization of particle-mesh simulations
Euro-Par'06 Proceedings of the 12th international conference on Parallel Processing
Scalable Distributed Two-Layer Data Structures SD2DS
International Journal of Distributed Systems and Technologies
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As high-performance computing moves to the petascale and beyond, a number of algorithmic and software challenges need to be addressed. This paper reviews the main performance-limiting factors in today's high-performance computing software and outlines a possible new programming paradigm to address them. The proposed paradigm is based on abstract parallel data structures and operations that encapsulate much of the complexity of an application, but still make communication overhead explicit. The authors argue that all numerical simulations can be formulated in terms of the presented abstractions, which thus define an abstract semantic specification language for parallel numerical simulations. Simulations defined in this language can automatically be translated to source code containing the appropriate calls to a middleware that implements the underlying abstractions. Finally, the structure and functionality of such a middleware are outlined while demonstrating its feasibility on the example of the parallel particle-mesh library PPM.