Genetic Algorithms in Search, Optimization and Machine Learning
Genetic Algorithms in Search, Optimization and Machine Learning
Robust Estimation of Camera Rotation, Translation and Focal Length at High Outlier Rates
CRV '04 Proceedings of the 1st Canadian Conference on Computer and Robot Vision
Division of labor in particle swarm optimisation
CEC '02 Proceedings of the Evolutionary Computation on 2002. CEC '02. Proceedings of the 2002 Congress - Volume 02
Chaotic Inertia Weight in Particle Swarm Optimization
ICICIC '07 Proceedings of the Second International Conference on Innovative Computing, Informatio and Control
The Inverse Protein Folding Process by Artificial Life Approaches
ICICSE '08 Proceedings of the 2008 International Conference on Internet Computing in Science and Engineering
Neuro-swarm hybridization for protein tertiary structure prediction
International Journal of Hybrid Intelligent Systems - Recent Advances in Intelligent Paradigms Fusion and Their Applications
Parallel particle swarm optimization applied to the protein folding problem
Proceedings of the 11th Annual conference on Genetic and evolutionary computation
An efficient hybrid Taguchi-genetic algorithm for protein folding simulation
Expert Systems with Applications: An International Journal
A review of recent advances in global optimization
Journal of Global Optimization
Parallel Hybrid Particle Swarm Optimization and Applications in Geotechnical Engineering
ISICA '09 Proceedings of the 4th International Symposium on Advances in Computation and Intelligence
Communication Latency Tolerant Parallel Algorithm for Particle Swarm Optimization
FCST '09 Proceedings of the 2009 Fourth International Conference on Frontier of Computer Science and Technology
Information Sciences: an International Journal
A study of parallel and distributed particle swarm optimization methods
Proceedings of the 2nd workshop on Bio-inspired algorithms for distributed systems
Protein structure prediction in lattice models with particle swarm optimization
ANTS'10 Proceedings of the 7th international conference on Swarm intelligence
Protein structure prediction using particle swarm optimization and a distributed parallel approach
Proceedings of the 3rd workshop on Biologically inspired algorithms for distributed systems
Analysis of toy model for protein folding based on particle swarm optimization algorithm
ICNC'05 Proceedings of the First international conference on Advances in Natural Computation - Volume Part III
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Particle swarm optimization is a powerful technique for computer aided prediction of proteins' three-dimensional structure. In this work, employing an all-atom force field and the standard algorithm, as implemented in the ArFlock library in previous work, the low-energy conformations of several peptides of different sizes in vacuum starting from completely extended conformations are investigated. The computed structures are in good overall agreement with experimental data and results from other computer simulations. Periodic boundary conditions applied to the search space improve the performance of the method dramatically, especially when the linear velocity update rule is used. It is also shown that asynchronous parallelization speeds up the simulation better than the synchronous one and reduces the effective time for predictions significantly.