A comparison among stochastic optimization algorithms for parameter estimation of biochemical kinetic models

  • Authors:
  • Simoní Da Ros;Gabriel Colusso;Thiago A. Weschenfelder;Lisiane De Marsillac Terra;Fernanda De Castilhos;Marcos L. Corazza;Marcio Schwaab

  • Affiliations:
  • Departamento de Engenharia Química, Universidade Federal de Santa Maria, Av. Roraima, 1000, Cidade Universitária, Santa Maria, RS 97105-900, Brazil;Departamento de Engenharia Química, Universidade Federal de Santa Maria, Av. Roraima, 1000, Cidade Universitária, Santa Maria, RS 97105-900, Brazil;Departamento de Engenharia Química, Universidade Federal do Paraná, Centro Politécnico, Jardim das Américas, Curitiba, PR 82530-990, Brazil;Departamento de Engenharia Química, Universidade Federal de Santa Maria, Av. Roraima, 1000, Cidade Universitária, Santa Maria, RS 97105-900, Brazil;Departamento de Engenharia Química, Universidade Federal do Paraná, Centro Politécnico, Jardim das Américas, Curitiba, PR 82530-990, Brazil;Departamento de Engenharia Química, Universidade Federal do Paraná, Centro Politécnico, Jardim das Américas, Curitiba, PR 82530-990, Brazil;Departamento de Engenharia Química, Universidade Federal de Santa Maria, Av. Roraima, 1000, Cidade Universitária, Santa Maria, RS 97105-900, Brazil

  • Venue:
  • Applied Soft Computing
  • Year:
  • 2013

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Abstract

Mathematical models in biochemical engineering field are usually composed by nonlinear kinetic equations, where the number of parameters that must be estimated from a set of experimental measurements is usually very high. In these cases, the estimation of the model parameters comprises numerical iterative methods for minimization of the objective function. Classical methods for minimization of the objective function, like the Newton method, requires a good initial guess for all parameters and differentiation of the objective function and/or model equations with respect to the model parameters. Besides, the use of stochastic optimization methods for parameter estimation has gained attention, since these methods do not require a good initial guesses of all model parameters and neither the evaluation of derivatives. In this work, some stochastic optimization methods (Artificial Bee Colony, Differential Evolution, Particle Swarm Optimization and Simulated Annealing) were used in the estimation of kinetic parameters of a biochemical model for an alcoholic fermentation of cassava hydrolyzed. The results indicated that Differential Evolution provides better results among the stochastic optimization methods evaluated.