Better methods for solving parsimony and compatibility
RECOMB '98 Proceedings of the second annual international conference on Computational molecular biology
Near optimal multiple alignment within a band in polynomial time
STOC '00 Proceedings of the thirty-second annual ACM symposium on Theory of computing
Zinc finger gene clusters and tandem gene duplication
RECOMB '01 Proceedings of the fifth annual international conference on Computational biology
Efficient Methods for Inferring Tandem Duplication History
WABI '02 Proceedings of the Second International Workshop on Algorithms in Bioinformatics
Topological Rearrangements and Local Search Method for Tandem Duplication Trees
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Near optimal multiple alignment within a band in polynomial time
Journal of Computer and System Sciences
Approximation algorithms for labeling hierarchical taxonomies
Proceedings of the nineteenth annual ACM-SIAM symposium on Discrete algorithms
Packing multiway cuts in capacitated graphs
SODA '09 Proceedings of the twentieth Annual ACM-SIAM Symposium on Discrete Algorithms
Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree Accuracy
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Approximation algorithms for constrained generalized tree alignment problem
Discrete Applied Mathematics
On the bottleneck tree alignment problems
Information Sciences: an International Journal
An exact and polynomial distance-based algorithm to reconstruct single copy tandem duplication trees
CPM'03 Proceedings of the 14th annual conference on Combinatorial pattern matching
Complexities of the centre and median string problems
CPM'03 Proceedings of the 14th annual conference on Combinatorial pattern matching
Evolving consensus sequence for multiple sequence alignment with a genetic algorithm
GECCO'03 Proceedings of the 2003 international conference on Genetic and evolutionary computation: PartII
Quantifying the Degree of Self-Nestedness of Trees: Application to the Structural Analysis of Plants
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
The bottleneck tree alignment problems
ICCSA'06 Proceedings of the 2006 international conference on Computational Science and Its Applications - Volume Part III
Phylogenetic profiling of insertions and deletions in vertebrate genomes
RECOMB'06 Proceedings of the 10th annual international conference on Research in Computational Molecular Biology
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