Fast protein folding in the hydrophobic-hydrophilic model within three-eights of optimal
STOC '95 Proceedings of the twenty-seventh annual ACM symposium on Theory of computing
On the complexity of string folding
Discrete Applied Mathematics - Special volume on computational molecular biology
When Hamming meets Euclid: the approximability of geometric TSP and MST (extended abstract)
STOC '97 Proceedings of the twenty-ninth annual ACM symposium on Theory of computing
Spatial codes and the hardness of string folding problems
Proceedings of the ninth annual ACM-SIAM symposium on Discrete algorithms
On the complexity of protein folding (abstract)
RECOMB '98 Proceedings of the second annual international conference on Computational molecular biology
Fast, Constraint-Based Threading of HP-Sequences to Hydrophobic Cores
CP '01 Proceedings of the 7th International Conference on Principles and Practice of Constraint Programming
Optimally Compact Finite Sphere Packings - Hydrophobic Cores in the FCC
CPM '01 Proceedings of the 12th Annual Symposium on Combinatorial Pattern Matching
Approximate protein folding in the HP side chain model on extended cubic lattices
Discrete Applied Mathematics - Special issue: Computational molecular biology series issue IV
The complexity of checking consistency of pedigree information and related problems
Journal of Computer Science and Technology - Special issue on bioinformatics
Inverse Protein Folding in 2D HP Mode (Extended Abstract)
CSB '04 Proceedings of the 2004 IEEE Computational Systems Bioinformatics Conference
An efficient genetic algorithm for predicting protein tertiary structures in the 2D HP model
GECCO '05 Proceedings of the 7th annual conference on Genetic and evolutionary computation
Heuristics, optimizations, and parallelism for protein structure prediction in CLP(FD)
PPDP '05 Proceedings of the 7th ACM SIGPLAN international conference on Principles and practice of declarative programming
Protein folding in the HP model on grid lattices with diagonals
Discrete Applied Mathematics
DFS Based Partial Pathways in GA for Protein Structure Prediction
PRIB '08 Proceedings of the Third IAPR International Conference on Pattern Recognition in Bioinformatics
Search-based structured prediction
Machine Learning
Clp-based protein fragment assembly*
Theory and Practice of Logic Programming
Twin Removal in Genetic Algorithms for Protein Structure Prediction Using Low-Resolution Model
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
A comparison of CLP(FD) and ASP solutions to NP-Complete problems
ICLP'05 Proceedings of the 21st international conference on Logic Programming
A new constraint solver for 3d lattices and its application to the protein folding problem
LPAR'05 Proceedings of the 12th international conference on Logic for Programming, Artificial Intelligence, and Reasoning
AI'06 Proceedings of the 19th Australian joint conference on Artificial Intelligence: advances in Artificial Intelligence
Multiobjectivizing the HP model for protein structure prediction
EvoCOP'12 Proceedings of the 12th European conference on Evolutionary Computation in Combinatorial Optimization
Locality-based multiobjectivization for the HP model of protein structure prediction
Proceedings of the 14th annual conference on Genetic and evolutionary computation
Memory-based local search for simplified protein structure prediction
Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine
An improved multiobjectivization strategy for HP model-based protein structure prediction
PPSN'12 Proceedings of the 12th international conference on Parallel Problem Solving from Nature - Volume Part II
A constraint solver for flexible protein models
Journal of Artificial Intelligence Research
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