The molecule problem: determining conformation from pairwise distances
The molecule problem: determining conformation from pairwise distances
Molecular conformations from distance matrices
Journal of Computational Chemistry
The Euclidian Distance Matrix Completion Problem
SIAM Journal on Matrix Analysis and Applications
Matrix computations (3rd ed.)
Global Continuation for Distance Geometry Problems
SIAM Journal on Optimization
Journal of Global Optimization
Applied Multidimensional Scaling
Applied Multidimensional Scaling
Graphical Models and Point Pattern Matching
IEEE Transactions on Pattern Analysis and Machine Intelligence
On the number of solutions of the discretizable molecular distance geometry problem
COCOA'11 Proceedings of the 5th international conference on Combinatorial optimization and applications
The discretizable molecular distance geometry problem
Computational Optimization and Applications
Deriving Finite Sphere Packings
SIAM Journal on Discrete Mathematics
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The Euclidean distance matrix (EDM) completion problem and the positive semidefinite (PSD) matrix completion problem are considered in this paper. Approaches to determine the location of a point in a linear manifold are studied, which are based on a referential coordinate set and a distance vector whose components indicate the distances from the point to other points in the set. For a given referential coordinate set and a corresponding distance vector, sufficient and necessary conditions are presented for the existence of such a point that the distance vector can be realized. The location of the point (if it exists) given by the approaches in a linear manifold is independent of the coordinate system, and is only related to the referential coordinate set and the corresponding distance vector. An interesting phenomenon about the complexity of the EDM completion problem is described. Some properties about the uniqueness and the rigidity of the conformation for solutions to the EDM and PSD completion problems are presented.