International Journal of Human-Computer Studies - Special issue: the Sisyphus-VT initiative
Ontological Foundations for Biology Knowledge Models
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology
Ontologies for conceptual modeling: their creation, use, and management
Data & Knowledge Engineering
Mining Information for Functional Genomics
IEEE Intelligent Systems
OntoShare: a knowledge management environment for virtual communities of practice
Proceedings of the 2nd international conference on Knowledge capture
Ontology negotiation between intelligent information agents
The Knowledge Engineering Review
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data
Journal of Biomedical Informatics
Suggesting novel but related topics: towards context-based support for knowledge model extension
Proceedings of the 10th international conference on Intelligent user interfaces
Using automatically learnt verb selectional preferences for classification of biomedical terms
Journal of Biomedical Informatics - Special issue: Named entity recognition in biomedicine
Gathering knowledge for a question answering system from heterogeneous information sources
HLTKM '01 Proceedings of the workshop on Human Language Technology and Knowledge Management - Volume 2001
Bridging the gap between biological and clinical informatics in a graduate training program
Journal of Biomedical Informatics
AUTOMATIC DOMAIN ONTOLOGY GENERATION FROM WEB SITES
Journal of Integrated Design & Process Science
Medical ontologies to support human disease research and control
International Journal of Web and Grid Services
Soft computing agents for e-Health in application to the research and control of unknown diseases
Information Sciences: an International Journal
Smooth introduction of semantic tagging in genotyping procedures
ITBAM'10 Proceedings of the First international conference on Information technology in bio- and medical informatics
The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data
Applied Ontology - Biomedical Ontologies
Management of genotyping-related documents by integrated use of semantic tagging
Transactions on large-scale data- and knowledge-centered systems IV
Ontological foundation for protein data models
OTM'05 Proceedings of the 2005 OTM Confederated international conference on On the Move to Meaningful Internet Systems
Towards semantic interoperability of protein data sources
OTM'06 Proceedings of the 2006 international conference on On the Move to Meaningful Internet Systems: AWeSOMe, CAMS, COMINF, IS, KSinBIT, MIOS-CIAO, MONET - Volume Part II
Grid services complemented by domain ontology supporting biomedical community
SAG'04 Proceedings of the First international conference on Scientific Applications of Grid Computing
TRAK ontology: Defining standard care for the rehabilitation of knee conditions
Journal of Biomedical Informatics
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The RiboWeb system is an online data resource for the ribosome, a vital cellular apparatus responsible for building proteins in all organisms. RiboWeb contains a large knowledge base of relevant published data and computational modules that can process this data to test hypotheses about the ribosome's structure. The system uses four principle ontologies to organize its knowledge. The first models molecules and processes relevant to molecular biology. The second describes biological data that has been collected about the ribosome and their key features and relationships. The third represents scientific publications and their key attributes. Finally, RiboWeb uses an ontology of the types of computations that it can perform. This declarative representation of computational capabilities allows explicit reasoning about possible actions and sequences of actions.