An Exact Method for Finding Short Motifs in Sequences, with Application to the Ribosome Binding Site Problem

Extracting structured motifs using a suffix tree—algorithms and application to promoter consensus identification

RECOMB '00 Proceedings of the fourth annual international conference on Computational molecular biology

Finding motifs using random projections

RECOMB '01 Proceedings of the fifth annual international conference on Computational biology

Finding motifs in the twilight zone

Proceedings of the sixth annual international conference on Computational biology

Discriminative motifs

Proceedings of the sixth annual international conference on Computational biology

Designing seeds for similarity search in genomic DNA

RECOMB '03 Proceedings of the seventh annual international conference on Research in computational molecular biology

Assessing the Statistical Significance of Overrepresented Oligonucleotides

WABI '01 Proceedings of the First International Workshop on Algorithms in Bioinformatics

Tsukuba BB: A Branch and Bound Algorithm for Local Multiple Sequence Alignment

COM '00 Proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching

Computational Complexity of Word Counting

JOBIM '00 Selected papers from the First International Conference on Computational Biology, Biology, Informatics, and Mathematics

A parallel algorithm for the extraction of structured motifs

Proceedings of the 2004 ACM symposium on Applied computing

Statistical Methods for the Discovery of Co-Operative Transcription Factors: The Co-bind Code Revised

IPDPS '05 Proceedings of the 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS'05) - Workshop 7 - Volume 08

Designing seeds for similarity search in genomic DNA

Journal of Computer and System Sciences - Special issue on bioinformatics II

Algorithms for extracting motifs from biological weighted sequences

Journal of Discrete Algorithms

An Exact Data Mining Method for Finding Center Strings and All Their Instances

IEEE Transactions on Knowledge and Data Engineering

DNA Motif Representation with Nucleotide Dependency

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

An efficient motif discovery algorithm with unknown motif length and number of binding sites

International Journal of Data Mining and Bioinformatics

An effective algorithm of motif finding problem

International Journal of Bioinformatics Research and Applications

MOGAMOD: Multi-objective genetic algorithm for motif discovery

Expert Systems with Applications: An International Journal

Improved pattern-driven algorithms for motif finding in DNA sequences

RECOMB'05 Proceedings of the 2005 joint annual satellite conference on Systems biology and regulatory genomics

Motif discovery using multi-objective genetic algorithm in biosequences

IDA'07 Proceedings of the 7th international conference on Intelligent data analysis

Brief Communication: Detection of potential positive regulatory motifs of transcription in yeast introns by comparative analysis of oligonucleotide frequencies

Computational Biology and Chemistry