TurboBLAST(r): A Parallel Implementation of BLAST Built on the TurboHub

Authors:
R. D. Bjornson;A. H. Sherman;S. B. Weston;N. Willard;J. Wing
Affiliations:
-;-;-;-;-
Venue:
IPDPS '02 Proceedings of the 16th International Parallel and Distributed Processing Symposium
Year:
2002

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Abstract

BLAST (Basic Local Alignment Search Tool) is by far the most widely used application for rapid screening of large sequence databases. This paper describes TurboBLAST, a parallel implementation of BLAST suitable for execution on networked clusters of heterogeneous PCs, workstations, or Macintosh computers.