Using the Functional Data Model to Integrate Distributed Biological Data Sources

  • Authors:
  • Graham J. L. Kemp;Joel Dupont;Peter M. D. Gary

  • Affiliations:
  • -;-;-

  • Venue:
  • SSDBM '96 Proceedings of the Eighth International Conference on Scientific and Statistical Database Management
  • Year:
  • 1996

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Abstract

There is unavoidable heterogeneity in the databanks and databases currently used for biological data collections. We are aiming to develop a system that will provide uniform access to heterogeneous databases via a single high-level query language or graphical interface and will enable multi-database queries. We have taken an approach in which high-level code in an object-oriented database system (based on the functional data model) is used effectively as a mediator between distributed heterogeneous databases. The resulting system enables us to ask queries that combine, for example, geometric calculations on three-dimensional protein structures stored locally and access to databanks held at the European Bioinformatics Institute, while making use of existing search engines and indexes when accessing remote data.