Shortening the Computational Time of the Fluorescent DNA Computing

  • Authors:
  • Yoichi Takenaka;Akihiro Hashimoto

  • Affiliations:
  • -;-

  • Venue:
  • DNA8 Revised Papers from the 8th International Workshop on DNA Based Computers: DNA Computing
  • Year:
  • 2002

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Abstract

We present a method to shorten the computational time of the fluorescent DNA computing. Fluorescent DNA computing is proposed to solve intractable computation problems such as SAT problems. They use two groups of fluorescent DNA strands. One group of fluorescent DNA represents that a constraint of the given problem is satisfied, and another group represents that a constraint is unsatisfied. The calculation is executed by hybridizing them competitively to DNA beads or spots on DNA microarray. Though the biological operation used in the fluorescent DNA computing is simple, it needs the same number of beads or spots on microarray as the number of candidate solutions. In this paper, we prove that one bead or spot can represent plural candidate solutions through SAT problem, and show the algorithm and an experimental result of the fluorescent DNA computing.