Codes, Involutions, and DNA Encodings
Formal and Natural Computing - Essays Dedicated to Grzegorz Rozenberg [on occasion of his 60th birthday, March 14, 2002]
NACST/Seq: A Sequence Design System with Multiobjective Optimization
DNA8 Revised Papers from the 8th International Workshop on DNA Based Computers: DNA Computing
DNA8 Revised Papers from the 8th International Workshop on DNA Based Computers: DNA Computing
A Software Tool for Generating Non-crosshybridizing Libraries of DNA Oligonucleotides
DNA8 Revised Papers from the 8th International Workshop on DNA Based Computers: DNA Computing
Shortening the Computational Time of the Fluorescent DNA Computing
DNA8 Revised Papers from the 8th International Workshop on DNA Based Computers: DNA Computing
Codes, involutions, and DNA encodings
Formal and natural computing
Natural Computing: an international journal
Journal of Computer Science and Technology - Special issue on bioinformatics
Codeword design and information encoding in DNA ensembles
Natural Computing: an international journal
Development, evaluation and benchmarking of simulation software for biomolecule-based computing
Natural Computing: an international journal
Involution codes: with application to DNA coded languages
Natural Computing: an international journal
Computer-aided design for DNA self-assembly: process and applications
ICCAD '05 Proceedings of the 2005 IEEE/ACM International conference on Computer-aided design
Design automation for DNA self-assembled nanostructures
Proceedings of the 43rd annual Design Automation Conference
Biological Clustering Method for Logistic Place Decision Making
KES '08 Proceedings of the 12th international conference on Knowledge-Based Intelligent Information and Engineering Systems, Part III
Application of a novel IWO to the design of encoding sequences for DNA computing
Computers & Mathematics with Applications
Implementation of Binary Particle Swarm Optimization for DNA Sequence Design
IWANN '09 Proceedings of the 10th International Work-Conference on Artificial Neural Networks: Part II: Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living
Evidential Reasoning Based on DNA Computation
KES '09 Proceedings of the 13th International Conference on Knowledge-Based and Intelligent Information and Engineering Systems: Part II
An Ant Colony System for DNA sequence design based on thermodynamics
ACST '08 Proceedings of the Fourth IASTED International Conference on Advances in Computer Science and Technology
Generating DNA code word for DNA computing with realtime PCR
ACST '08 Proceedings of the Fourth IASTED International Conference on Advances in Computer Science and Technology
Evolutionary model for sequence generation
ICIC'07 Proceedings of the intelligent computing 3rd international conference on Advanced intelligent computing theories and applications
Watson---Crick palindromes in DNA computing
Natural Computing: an international journal
DNA computing: a research snapshot
Algorithms and theory of computation handbook
DNA computing approach to construction of semantic model
ICNC'05 Proceedings of the First international conference on Advances in Natural Computation - Volume Part II
DNA computing for complex scheduling problem
ICNC'05 Proceedings of the First international conference on Advances in Natural Computation - Volume Part II
A study on lower bound of direct proportional length-based DNA computing for shortest path problem
CIS'04 Proceedings of the First international conference on Computational and Information Science
BioADIT'06 Proceedings of the Second international conference on Biologically Inspired Approaches to Advanced Information Technology
ICIC'06 Proceedings of the 2006 international conference on Computational Intelligence and Bioinformatics - Volume Part III
Demonstration of DNA-Based semantic model by using parallel overlap assembly
ICIC'05 Proceedings of the 2005 international conference on Advances in Intelligent Computing - Volume Part I
Bond-free languages: formalizations, maximality and construction methods
DNA'04 Proceedings of the 10th international conference on DNA computing
Proceedings of the 15th annual conference companion on Genetic and evolutionary computation
Engineering Applications of Artificial Intelligence
Improving the design of sequences for DNA computing: A multiobjective evolutionary approach
Applied Soft Computing
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In DNA Computing and DNA nanotechnology the design of proper DNA sequences turned out to be an elementary problem [1, 2, 3, 4, 5, 6, 7, 8, 9]. We here present a software program for the construction of sets ("pools") of DNA sequences. The program can create DNA sequences to meet logical and physical parameters such as uniqueness, melting temperature and GC ratio as required by the user. It can create sequences de novo, complete sequences with gaps and allows import and recycling of sequences that are still in use. The program always creates sequences that are -- in terms of uniqueness, GC ratio and melting temperature-- "compatible" to those already in the pool, no matter whether those were added manually or created or completed by the program itself. The software comes with a GUI and a Sequence Wizard. In vitro tests of the program's output were done by generating a set of oligomers designed for self-assembly. The software is available for download under http://LS11-www.cs.uni-dortmund.de/molcomp/Downloads/downloads. html.