PUNCH: An Evolutionary Algorithm for Optimizing Bit Set Selection
DNA 7 Revised Papers from the 7th International Workshop on DNA-Based Computers: DNA Computing
DNASequencesGenerator: A Program for the Construction of DNA Sequences
DNA 7 Revised Papers from the 7th International Workshop on DNA-Based Computers: DNA Computing
Developing Support System for Sequence Design in DNA Computing
DNA 7 Revised Papers from the 7th International Workshop on DNA-Based Computers: DNA Computing
Muiltiobjective optimization using nondominated sorting in genetic algorithms
Evolutionary Computation
Temperature Gradient-Based DNA Computing for Graph Problems with Weighted Edges
DNA8 Revised Papers from the 8th International Workshop on DNA Based Computers: DNA Computing
DNA13'07 Proceedings of the 13th international conference on DNA computing
Designing nucleotide sequences for computation: a survey of constraints
DNA'05 Proceedings of the 11th international conference on DNA Computing
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The importance of DNA sequence design for reliable DNA computing is well recognized. In this paper, we describe a DNA sequence optimization system NACST/Seq that is based on a multiobjective genetic algorithm. It uses the concept of Pareto optimization to reflect many realistic characteristics of DNA sequences in real bio-chemical experiments flexibly. This feature allows to recommend multiple candidate sets as well as to generate the DNA sequences, which fit better to a specific DNA computing algorithm. We also describe DNA sequence analyzer that can examine and visualize the properties of given DNA sequences.