Natural Computing: an international journal
The Fidelity of Annealing-Ligation: A Theoretical Analysis
DNA '00 Revised Papers from the 6th International Workshop on DNA-Based Computers: DNA Computing
PUNCH: An Evolutionary Algorithm for Optimizing Bit Set Selection
DNA 7 Revised Papers from the 7th International Workshop on DNA-Based Computers: DNA Computing
The Fidelity of the Tag-Antitag System
DNA 7 Revised Papers from the 7th International Workshop on DNA-Based Computers: DNA Computing
NACST/Seq: A Sequence Design System with Multiobjective Optimization
DNA8 Revised Papers from the 8th International Workshop on DNA Based Computers: DNA Computing
Algorithms for Testing That Sets of DNA Words Concatenate without Secondary Structure
DNA8 Revised Papers from the 8th International Workshop on DNA Based Computers: DNA Computing
Software Tools for DNA Sequence Design
Genetic Programming and Evolvable Machines
Physical modeling of biomolecular computers: Models, limitations, and experimental validation
Natural Computing: an international journal
Efficient algorithm for testing structure freeness of finite set of biomolecular sequences
DNA'05 Proceedings of the 11th international conference on DNA Computing
Experimental validation of DNA sequences for DNA computing: use of a SYBR green I assay
DNA'05 Proceedings of the 11th international conference on DNA Computing
Specificity of hybridization between DNA sequences based on free energy
DNA'05 Proceedings of the 11th international conference on DNA Computing
A weighted insertion-deletion stacked pair thermodynamic metric for DNA codes
DNA'04 Proceedings of the 10th international conference on DNA computing
Testing structure freeness of regular sets of biomolecular sequences
DNA'04 Proceedings of the 10th international conference on DNA computing
DNA'04 Proceedings of the 10th international conference on DNA computing
Application of a novel IWO to the design of encoding sequences for DNA computing
Computers & Mathematics with Applications
Towards domain-based sequence design for DNA strand displacement reactions
DNA'10 Proceedings of the 16th international conference on DNA computing and molecular programming
Graph-theoretic formalization of hybridization in DNA sticker complexes
DNA'11 Proceedings of the 17th international conference on DNA computing and molecular programming
A formal model for databases in DNA
ANB'10 Proceedings of the 4th international conference on Algebraic and Numeric Biology
Proceedings of the 16th International Conference on Database Theory
Graph-theoretic formalization of hybridization in DNA sticker complexes
Natural Computing: an international journal
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We survey common biochemical constraints useful for the design of DNA code words for DNA computation. We define the DNA Code Constraint Problem and cover biochemistry topics relevant to DNA libraries. We examine which biochemical constraints are best suited for DNA word design.