Communicating sequential processes
Communicating sequential processes
Statecharts: A visual formalism for complex systems
Science of Computer Programming
The Unified Modeling Language user guide
The Unified Modeling Language user guide
Hierarchical Hybrid Modeling of Embedded Systems
EMSOFT '01 Proceedings of the First International Workshop on Embedded Software
Lateral Inhibition through Delta-Notch Signaling: A Piecewise Affine Hybrid Model
HSCC '01 Proceedings of the 4th International Workshop on Hybrid Systems: Computation and Control
Accurate Event Detection for Simulating Hybrid Systems
HSCC '01 Proceedings of the 4th International Workshop on Hybrid Systems: Computation and Control
Reachability Analysis of Hybrid Systems via Predicate Abstraction
HSCC '02 Proceedings of the 5th International Workshop on Hybrid Systems: Computation and Control
Construction of Abstract State Graphs with PVS
CAV '97 Proceedings of the 9th International Conference on Computer Aided Verification
International Journal of Data Mining and Bioinformatics
Discrete event multi-level models for systems biology
Transactions on Computational Systems Biology I
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In this paper we introduce our new tool BIOSKETCHPAD that allows visual progamming and modeling of biological regulatory networks. The tool allows biologists to create dynamic models of networks using a menu of icons, arrows, and pop-up menus, and translates the input model into CHARON, a modeling language for modular design of interacting multi-agent hybrid systems. Hybrid systems are systems that are characterized by continuous as well as discrete dynamics. Once a CHARON model of the underlying system is generated, we are able to exploit the various analysis capabilities of the CHARON toolkit, including simulation and reachability analysis. We illustrate the advantages of this approach using a case study concerning the regulation of bioluminescence in a marine bacterium.