A FPGA-based hardware implementation of generalized profile search using online arithmetic
FPGA '99 Proceedings of the 1999 ACM/SIGDA seventh international symposium on Field programmable gate arrays
Placing, Routing, and Editing Virtual FPGAs
FPL '01 Proceedings of the 11th International Conference on Field-Programmable Logic and Applications
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This paper presents a systolic filter for speeding up the scan of DNA databases. The filter acts as a co-processor which performs the more intensive computations occurring during the process. Our Validation, based on a FPGA prototype board tightly connected to a workstation, has shown that the filter may boost the performance of the machine by a factor ranging from 50 to 400 over current workstations.