Understanding captions in biomedical publications
Proceedings of the ninth ACM SIGKDD international conference on Knowledge discovery and data mining
Journal of VLSI Signal Processing Systems - Special issue on signal processing and neural networks for bioinformatics
Evaluation of Face Datasets as Tools for Assessing the Performance of Face Recognition Methods
International Journal of Computer Vision
WND-CHARM: Multi-purpose image classification using compound image transforms
Pattern Recognition Letters
Structured correspondence topic models for mining captioned figures in biological literature
Proceedings of the 15th ACM SIGKDD international conference on Knowledge discovery and data mining
Exploring text and image features to classify images in bioscience literature
BioNLP '06 Proceedings of the Workshop on Linking Natural Language Processing and Biology: Towards Deeper Biological Literature Analysis
Exploring text and image features to classify images in bioscience literature
LNLBioNLP '06 Proceedings of the HLT-NAACL BioNLP Workshop on Linking Natural Language and Biology
Impressionism, expressionism, surrealism: Automated recognition of painters and schools of art
ACM Transactions on Applied Perception (TAP)
BIRD'07 Proceedings of the 1st international conference on Bioinformatics research and development
Invited paper: Structured literature image finder: Parsing text and figures in biomedical literature
Web Semantics: Science, Services and Agents on the World Wide Web
ISMB/ECCB'09 Proceedings of the 2009 workshop of the BioLink Special Interest Group, international conference on Linking Literature, Information, and Knowledge for Biology
Automatic figure classification in bioscience literature
Journal of Biomedical Informatics
Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine
IScIDE'12 Proceedings of the third Sino-foreign-interchange conference on Intelligent Science and Intelligent Data Engineering
Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics
A novel figure panel classification and extraction method for document image understanding
International Journal of Data Mining and Bioinformatics
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There is extensive interest in automating the collection, organization and analysis of biological data. Data in the form of images present special challenges for such efforts. Since fluorescence microscope images are a primary source of information about the location of proteins within cells, we have set as a long-term goal the building of a knowledge base system that can interpret such images in online journals. To this end, we first developed a robot that searches online journals and finds fluorescence microscope images of individual cells. We then characterized the applicability of pattern classification methods we have previously used on images obtained under controlled conditions to images from different sources and to images subjected to manipulations commonly performed during publication. The results indicate the feasibility of developing search engines to find fluorescence microscope images depicting particular subcellular patterns.