IntelliGEN: A Distributed Workflow System for Discovering Protein-Protein Interactions
Distributed and Parallel Databases
Streamlining Biological Data Analysis Using BioFlow
BIBE '03 Proceedings of the 3rd IEEE Symposium on BioInformatics and BioEngineering
An integration platform for heterogeneous bioinformatics software components
IBM Systems Journal - Deep computing for the life sciences
VLDB '02 Proceedings of the 28th international conference on Very Large Data Bases
Managing structural genomic workflows using web services
Data & Knowledge Engineering - Special issue: Biological data management
Rule-based workflow management for bioinformatics
The VLDB Journal — The International Journal on Very Large Data Bases
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In this paper, we describe a graphical workflow management system called HyperThesis to address the challenges of integrating bioinformatics applications. HyperThesis is an integral component of the Genomics Research Network Architecture (gRNA). The gRNA was designed and developed to address the challenges of developing new bioinformatics applications. Specifically, HyperThesis makes constructing workflows (pipelines of execution of applications) in the gRNA fast and intuitive for biologists and bio-programmers alike. It provides a large repository of interconnectable, parameterized workflow components for processing and relating diverse biological data and software programs. It also enables us to add new workflow components as new algorithms develop in ones area of interest. HyperThesis has been fully implemented using Java.